Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02542 ATGGCAAACCACACTATTATATTGAAAAAGACTACAATTCTACCATTTTTAACTTGCAAGATTTGTGATGAATTGCTGGAGGATGCTACTGCTATTGTTGAATGTCTTCATTTATTTTGCAAGAAGTGCATCCATCACAAAATTATTGAAGAGGAATTAGAACATTGTCCAGTGTGCGATCTAGATTTGGGACCTAAACCTCTCAAGAAATTGAGGCATGACGAAAGTATGCAATCAATAAGGAACACAATATTTCCTCCAAGAAAAAGAAATATTGTTAATAAAGTAGATGATGATGTTGCCAATGCTGAGAAGAATGAGTTATTAGGTGACCTTGGCAGAATTTTGTTTGAAGATCCTGAGAATGAAAAAGATATGGCGTTAAAAGATTTACCATATACTTCAAAAGAACATGTAGAGAATATCAAAGAGGGTTTGCTACCTTCTGAAAAGAGTCATTGCATGCAAAACGAAAATGTTAAGGGTAAAAGTATTTGTCCTGATAATGTGGAAGGATAA 519 0.3391 MANHTIILKKTTILPFLTCKICDELLEDATAIVECLHLFCKKCIHHKIIEEELEHCPVCDLDLGPKPLKKLRHDESMQSIRNTIFPPRKRNIVNKVDDDVANAEKNELLGDLGRILFEDPENEKDMALKDLPYTSKEHVENIKEGLLPSEKSHCMQNENVKGKSICPDNVEG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02542 172 SUPERFAMILY RING/U-box 13 74 - -
Arst9g02542 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 110 IPR013083 -
Arst9g02542 172 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 97 IPR044807 GO:0004842
Arst9g02542 172 SMART ring_2 19 59 IPR001841 -
Arst9g02542 172 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Arst9g02542 172 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Arst9g02542 172 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02542 8 90 C3H Transcription Factor Family AT2G30580 53.012 1.29e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02542 - - adu:127741584 332.413