Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02470 ATGACGGGGCAAGCGGTGAAGCTGAATAGAGCCAAGCTTGAGGCATGCTTAACATGTCCTTTGTGCAATAAATTGTTCAACAATGCCACCACCATTTCAGAATGCTTACACACTTTTTGCAGGGGATGCATAGATAAGAAGCTAATAGATGAGCAACTAAAGCACTGTCCAGTATGCAATGCTGACTTGGGTTGTTCTCCACTTGATAAATTAAGGACAGATCATAGTTTACAAGATTTGAGGAACAAAATTTTGCCTGAAGAAGGAAAAAAAATTGCCAAGACACCTAAGAATTGTGTGAAAAGAAAGAAGAAATCTCTGTCTTCTCTAGAAGCCAACGCAACAGAAGCAAAAGCTGCTACTCCTGAGAGAGAAGTTTCCGCGCCTTCGCAACCGGATTGTTCTTCTCCTAAGCCTGAAAAGGTGGAGGAAGATGTCAGGAAAGACGAGAAACAACCGCGGAGGATAGGAATCTTGGATGAAGTCTCTACAAAGTTAACTGCAAGAAGAGCTAAAGTTGTAGCAAGAAAAAAGTACCTTCTGAAAGAGTTAACATCATCTTGTGAACCGGATAAAGTAACGGGAGATCAGAAGAAAGAAAATGATGACCGGTTTCAGCTTGAAATTTCCAATGACAGTTCCAAAGCCAGAGTTCAGAATCCTTCAAAACCAGATTCAAGTCAACAAATAGTGCCAAACAAGATTCCAATTGACAATGTTGAATCATGGCAAGAAGCTCTTGATTTGTGTGAGCCATTAAATTCCATTGTAGAAGCTGCAAGGAAGAACAAATCTTGCAGTAAGTCCACTATGCAAGAACATGCTGTCATTCCATCAGTAAAGTCAAGTGACAATGATGGCCAGCCTAAGGTTGAAAATGGTGATGAGAATGAATCGAATCGTTCGAGATCATCGGATACAAAAGGAAGAAAACTCAAATTCTCTGAGGACTTGAATGTTCCAGTACAGCAGCCTGTGATTACTTCAAATGGTGAAAGCAACAGAGGGTTTGGTCCAGTTTGGTTCTCCTTGGTTGCTTCTGAAGTGAACGAAGAAAGTGCAAAATTGCCAAAAATAACCCCCAGCTACTTAAGGGTCAAGGATGGTAGTTTACTTGTTTCCCATATCAAAATGTATATAGTGAAGAAGCTTGGTCTTGTTAGCGAATCCGAGGTGGAGATCTCTTTGCAAGGTAAACCGGTTCTACCTTGCATGCAACTGCAAAACTTGGTAGAGTTGTGGCTGCAAACAAAGCCATTGAATGAGAAGATTCAAACACATGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATCATCGAAAGTCCTGA 1338 0.4088 MTGQAVKLNRAKLEACLTCPLCNKLFNNATTISECLHTFCRGCIDKKLIDEQLKHCPVCNADLGCSPLDKLRTDHSLQDLRNKILPEEGKKIAKTPKNCVKRKKKSLSSLEANATEAKAATPEREVSAPSQPDCSSPKPEKVEEDVRKDEKQPRRIGILDEVSTKLTARRAKVVARKKYLLKELTSSCEPDKVTGDQKKENDDRFQLEISNDSSKARVQNPSKPDSSQQIVPNKIPIDNVESWQEALDLCEPLNSIVEAARKNKSCSKSTMQEHAVIPSVKSSDNDGQPKVENGDENESNRSRSSDTKGRKLKFSEDLNVPVQQPVITSNGESNRGFGPVWFSLVASEVNEESAKLPKITPSYLRVKDGSLLVSHIKMYIVKKLGLVSESEVEISLQGKPVLPCMQLQNLVELWLQTKPLNEKIQTHVGSSAKDFVMVLSYHRKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02470 445 SMART ring_2 19 59 IPR001841 -
Arst9g02470 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Arst9g02470 445 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Arst9g02470 445 MobiDBLite consensus disorder prediction 265 315 - -
Arst9g02470 445 MobiDBLite consensus disorder prediction 211 233 - -
Arst9g02470 445 Coils Coil 100 120 - -
Arst9g02470 445 MobiDBLite consensus disorder prediction 192 210 - -
Arst9g02470 445 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Arst9g02470 445 MobiDBLite consensus disorder prediction 189 233 - -
Arst9g02470 445 SUPERFAMILY RING/U-box 13 86 - -
Arst9g02470 445 MobiDBLite consensus disorder prediction 265 287 - -
Arst9g02470 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 444 IPR044807 GO:0004842
Arst9g02470 445 MobiDBLite consensus disorder prediction 110 152 - -
Arst9g02470 445 CDD RING-HC_PCGF 17 60 - -
Arst9g02470 445 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Arst9g02470 445 MobiDBLite consensus disorder prediction 137 152 - -
Arst9g02470 445 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02470 Arst-Chr9 89685479 89689319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02470 1 367 C3H Transcription Factor Family AT2G30580 31.443 1.54e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02470 K16277 - pop:7474161 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g02470 9 89685479 89689319 Arst9g02470 9 89685479 89689319 ECH