Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02140 ATGGAAGTTATGTCTTTTTCTGTCACATTCACCCAATTTCATACATTTTCCTTTCTGAAACCAAAAGTAACAACAACCGAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATTTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACCCAGAAGAACCGCTACTGGATGGTACTCATGGAGCCTCCACCTCATGGTGTCACCTCCAAGTCACAACTCATCGATTATTACGCCAACACTCTACACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCTGATCCGGATTTCAGTTCTTCGAAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACCAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTGATGGGAAATGAAAAGGATGCTCAGATGTGCATATATCATGTTTCCTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGTTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGCAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAACAAGTCAGGCAGCTCCCCTGCAAACGAAAAAGCTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTATTGAGTACACCACGGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCCAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCGCCAAGGCACAACAGGGGTCATGTCAGGCCATCAGTTTGA 1167 0.4002 MEVMSFSVTFTQFHTFSFLKPKVTTTEIQGLSLPNNRSKHCNLYSFSSSSSRSIAATATLYPSTTQKNRYWMVLMEPPPHGVTSKSQLIDYYANTLHKVLASERDAQMCIYDASCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSKKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELVGVPGVLSVQPDNNFESANKDYEGNNLENSLSVQKSFETSQAAPLQTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGQIINGWMIVVDVAKTNPPRHNRGHVRPSV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02140 388 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 59 156 IPR039206 GO:0016554
Arst9g02140 388 SUPERFAMILY RNA-binding domain, RBD 287 384 IPR035979 GO:0003676
Arst9g02140 388 Gene3D - 265 387 IPR012677 -
Arst9g02140 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 264 IPR037045 -
Arst9g02140 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 52 149 IPR037045 -
Arst9g02140 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Arst9g02140 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Arst9g02140 388 SMART rrm1_1 297 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02140 Arst-Chr9 67624222 67632108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02140 296 378 C2H2 Transcription Factor Family AT2G19380 32.530 4.21e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02140 - - gmx:100791652 518.464