Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02044 ATGGTGACGAACACCAACAAGGTCGTGAAAGTGAAGAGAGACACGCTAAGAGCATGCATGACATGCCCTCTTTGCAATAACCTCCTCAAAGATGCCACCACTATCTCTCTCTGCCTCCACACATTTTGTAGGAAGTGTATATATGAGAAGCTCTCGGATGAGGAGGTGGATTGCTGTCCTGTGTGCAACATTGATCTAGGCTGCCTTCCGGTGGAAAAACTCAGGGCAGACCATAATTTACAAGACATAAGGGCTAAAATATTTCCTTATAAGAAAAGGAAGACCAAGATCAAGGAACCAGAAGTTTTTCCTTCAGTATCCCCACCTGCAAAGAGGAAGGAAAGATCACTTTCATCGTTGGTAGCTCCGAAAGTTTCGGCACAAACAGGCCTTACAGGAAAGAGGACAAAAACTGTGTCAAGAAAGGCTGCTGCATTACGTGGGTGCAGTTTTATTCTTGAAGAATCCATAAAAAAGGAAGAAACAAATGGTGGAGATAACATGGATTCGTCAACGCCTGAGCCTTCTAAGAAAAACAAGTCCAGCGAAAGCACGGAGAACAGTGTAGAACTTACAGAAGGTAAGGCTGATCTCTGGACACCGTTAAACTGCCTTGTTGAAGCCGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAGTTCCCCCTGCCAAATCGGACTCTCCAACTACTGCACATGATGCACGAGATATGTCCGAAATCACAAACAAAGCCGAGCTACCTGCTTCAGGTCAGAATGAAATAGGCATTCCAAAATCTAAGAGTAAGGATAATGGACACAAAGCAAAATTTGGTGATGGCAAGGATGGCAACAGCGTGCCTTCGGGACCAGTGAAGCGAAGAAGGTTGCGGCCTTCTGGTCAGAAAAAGGTTGCGCCGACTGAGGGGTCTACCTCAGCCCAAGTCATGCTAGATGCAACAAGGGGATATTGCAACAGAAAGAACACCCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCGTTGCCACAGGTCTCAGCATGTTACTTAAGAATAAAGGATGGCACTGTGCCTGTTTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTAGAAATAATGTGCCGGGGTCAACCAGTGCTGCCATCTCTGCAACTACACAACCTTGTAGATTTGTGGTTCAGAACAGCATCAACCTCAAAAAAGATACCAGCATCTGTAGGATCATCAGCCAAGGATTTTGTTATGGTTTTATCATATTGTCGAAAGGCCTTGCCACCTTGA 1305 0.4498 MVTNTNKVVKVKRDTLRACMTCPLCNNLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRADHNLQDIRAKIFPYKKRKTKIKEPEVFPSVSPPAKRKERSLSSLVAPKVSAQTGLTGKRTKTVSRKAAALRGCSFILEESIKKEETNGGDNMDSSTPEPSKKNKSSESTENSVELTEGKADLWTPLNCLVEAANRTKSSRSNSQAVPPAKSDSPTTAHDARDMSEITNKAELPASGQNEIGIPKSKSKDNGHKAKFGDGKDGNSVPSGPVKRRRLRPSGQKKVAPTEGSTSAQVMLDATRGYCNRKNTPIWFSLVASEDQKGDVPLPQVSACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02044 434 SMART ring_2 22 62 IPR001841 -
Arst9g02044 434 MobiDBLite consensus disorder prediction 157 195 - -
Arst9g02044 434 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 432 IPR044807 GO:0004842
Arst9g02044 434 CDD RING-HC_PCGF 20 63 - -
Arst9g02044 434 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Arst9g02044 434 MobiDBLite consensus disorder prediction 246 260 - -
Arst9g02044 434 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Arst9g02044 434 SUPERFAMILY RING/U-box 16 81 - -
Arst9g02044 434 MobiDBLite consensus disorder prediction 210 227 - -
Arst9g02044 434 MobiDBLite consensus disorder prediction 261 275 - -
Arst9g02044 434 MobiDBLite consensus disorder prediction 210 306 - -
Arst9g02044 434 Gene3D - 307 410 - -
Arst9g02044 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 108 IPR013083 -
Arst9g02044 434 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02044 Arst-Chr9 60455413 60460627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02044 8 353 C3H Transcription Factor Family AT2G30580 43.288 2.04e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02044 K16277 - gmx:100783999 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g02044 9 60455413 60460627 Arst9g02044 9 60455413 60460627 ECH