Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01973 ATGGCTACTTTTAAAGAAGAGTGGGAAACTGTGCTGGACGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTCGACGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAAGGAAGCTCCCAATGGTTGCCGCACTGAAGCATGGAAAAAGAGGAATCATTGGGTAGGGTTGCAGGCAACTACGGAAATTGCTGAATCAGTTGCTGATGCTGAGAAGTATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTTGAAGAGGGAGCTAGTGGATTTCTCCAAAAAAAAATTGGTGATGAAACCAAGGATCCTGTAAAGAAAGGAATGGAGGGAGATTGGGATTTGTTCAATAAAATAGTGTCTGATGGGAGTGGCACTGATGTTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACCCCACAGCAAGCTGCACTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTAGAGGAGATTGACGATGTTGATGGCAATTCGGCTGATCCATTTGTTGCAGCTGCGATAGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAGAGACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGTTGATAGGAAGCTTCAAATCCATTTGAAACAAAGGAGGCGTCGGAAGAAAAGTAAACAGAACGATAAACTTGAAGATTTTGATGCTGGTTACGATCTTGAAAAGGATAATGCTATGAGTACTGGTGACTTGGCTGATCCACCCAAATCTTTGTTGGATGATATTATTGAACAGCGGGGAACTAAGCGTTTGAATGATGGTGAGCTCGACACTGATAATAAAAAGTCTCGTACTATTAGTGATGACAGTGACGATGACACAGATGCCATTGAAGACAAGGTAGATAGGAATATGAGTACTCTAGAGGAAAAAGGCTTATTAAACAGTGGTGCTGATACTCTTCCTTCAGTGTGTCCAAATGAGAAATTTCACTGCACAATTTGTCATCAAGTGGCTCTTGAAGTTCACTCACACCCTCTGTTGAAGGTGATTATTTGTGGAGATTGCAATTGCTTAATGGAGGAAAAGATATGCCGAAAGGACCTGAGTCTTGATTCTCCCTCAAGTCATTGTGCATGGTGTGGAGGAAGCAGTGGATTAATTAATTGTAAATCATGCACAATGTTATTCTGCACCAACTGCATAAAGAAGAATCTTGGTGCAGAATCTCTTACTAAAGCTCAGGCCACTGGCTGGGATTGTTGTTTTTGCCAGCCAAATAGTCTGCAAAGACTGACACTGCTATTGGAGAAAGCTATGGGATCTACTGCTGAACTAGTTTCCAGCTCTAGCAGTGATTCAGAAAATTCAGATGATTCAGATGATTCGGATGAGTCTGATGCAGAGATTAATGCTACAATCAGCTCTAAGAGAAGGCGCAAAAAGAAGATTCGAAGGATACTCGATGATACGGAATTAGGTGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGGCCAGTTCTCTGCTTCACCAAATGAAATGAGCTCATCAAATTTATCCGAAGGGGCTAGTGTTGAAGTTCTTGGCGATGCGGCATCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCGAGCATCTCAGCCAAACTCAAAGCCCACCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAGTAGAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATTGCTTTCTTGTACACTGCAATGAGGTGTGTTGATTTGGGGTTAAGGACCGCACTTATAGTCACACCTGTCAATGTTCTGCATAATTGGCGGCAGGAGTTTATTAAGTGGAAGCCCTCAGAGTTAAAGCAACTCAGAGTCTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGTTGAGCTGCTTGCAAAGTGGAGAACCAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGTAATTTATCTTTTGGGAAGCATGTGAAAGACCGGAATGTGGCCAGAGAGATTTGCCATGCTTTGCAGGATGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATTAAAAATACAAGGGCTGATGTAACTCATGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCCCTGACTGGATCGCCCCTTCAAAACAATCTCATGGAATACTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGAAACCGCTTCCAGAATCCTATAGAGAATGGTCAACACACTAATTCGACTCTCACAGATGTGAAAATTATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGACTGTGGTGAAAAAGGATCTACCCCCCAAAACTGTCTTCGTGGTAACCGTCAAGCTTTCTTTGTTACAAAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGGTTCAGTAAAGACAGCGCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCGTTAGCCCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGACAAGGACTATGTAAGACAAGAAGAAGCTGTTGAGAATTTTATCGTGGATGACTGCAGCAGTGATGATAATTCTGATATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCGCAAAAGAAAGATGGTACTGGCTTTTTCGTAAAGGGTTGGTGGCATGATCTACTTCCTGGAAAGATTTATAGAGAGCCTGATCATGGTGGCAAAATGGTTTTGCTACTAGAGATATTAACCATAAGTTCTAGTGTGGGCGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACGCTAGACCTCATAGAACTTTATCTCTCAAAGATACCTCGACATGGCAAACCTGGGAAGCGTTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAGGATTGTTGAGAGATTTAATGAGCCCTCAAATAAGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGTTCTTTGGGTATTAACCTTCATTCTGCTAACCGTGTTGTTATAATTGATGGTTCTTGGAATCCAACATACGATCTGCAGGCCATCTATCGTGCTTGGAGGTATGGGCAGACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACCATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAGCAGTAGTAATACAGTTAAACATACAACACCACATTCAAATGGAAGTAGCAACTCTGATAAGCTAATGGAAAGCTTACTTAAAAATCATCAACCCCGTTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAGAAATCACTTGAATGGGAAGAAGTGGGGAGGGTACCAATTAGTGACCCCATGCCTGATCAAAAGGCAGAGATGGCTGCAAGTTCAAAACTACAACAGGTGAAAGACCCTCTTAGCATGGTGTCAAGTAGTAGAATAAGGAATCGTTTTAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATCAGGTGGGATGACTTGAAGATTACTAAATAG 3999 0.4184 MATFKEEWETVLDDLETESANLLEQLDGAGIELPSLYKWIEKEAPNGCRTEAWKKRNHWVGLQATTEIAESVADAEKYLQVNRPVRRRHGKLLEEGASGFLQKKIGDETKDPVKKGMEGDWDLFNKIVSDGSGTDVSFGSKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSADPFVAAAIANERELDLSEEQKRQFKKVKEEDDAIVDRKLQIHLKQRRRRKKSKQNDKLEDFDAGYDLEKDNAMSTGDLADPPKSLLDDIIEQRGTKRLNDGELDTDNKKSRTISDDSDDDTDAIEDKVDRNMSTLEEKGLLNSGADTLPSVCPNEKFHCTICHQVALEVHSHPLLKVIICGDCNCLMEEKICRKDLSLDSPSSHCAWCGGSSGLINCKSCTMLFCTNCIKKNLGAESLTKAQATGWDCCFCQPNSLQRLTLLLEKAMGSTAELVSSSSSDSENSDDSDDSDESDAEINATISSKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASPNEMSSSNLSEGASVEVLGDAASGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIVESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVPRDRRVELLAKWRTKGGVFLIGYTAFRNLSFGKHVKDRNVAREICHALQDGPDILVCDEAHMIKNTRADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVVTVKLSLLQRKLYKRFLDVHGFSKDSAHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVRQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGKIYREPDHGGKMVLLLEILTISSSVGDKVLVFSQSIPTLDLIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNKRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGSSSNTVKHTTPHSNGSSNSDKLMESLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYKKSLEWEEVGRVPISDPMPDQKAEMAASSKLQQVKDPLSMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRWDDLKITK 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01973 1332 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 979 1150 IPR001650 -
Arst9g01973 1332 SMART helicmild6 1005 1102 IPR001650 -
Arst9g01973 1332 MobiDBLite consensus disorder prediction 1169 1194 - -
Arst9g01973 1332 MobiDBLite consensus disorder prediction 275 302 - -
Arst9g01973 1332 CDD ADDz_ATRX 334 432 - -
Arst9g01973 1332 SMART ultradead3 571 792 IPR014001 -
Arst9g01973 1332 Gene3D - 840 1191 IPR027417 -
Arst9g01973 1332 ProSiteProfiles ADD domain profile. 326 458 IPR025766 -
Arst9g01973 1332 Pfam Helicase conserved C-terminal domain 977 1102 IPR001650 -
Arst9g01973 1332 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 597 780 IPR014001 -
Arst9g01973 1332 PANTHER RAD54-LIKE 1 1328 IPR044574 GO:0016887
Arst9g01973 1332 PANTHER RAD54-LIKE 1 1328 IPR044574 GO:0016887
Arst9g01973 1332 MobiDBLite consensus disorder prediction 452 480 - -
Arst9g01973 1332 Pfam SNF2-related domain 598 898 IPR000330 GO:0005524|GO:0140658
Arst9g01973 1332 CDD SF2_C_SNF 963 1113 - -
Arst9g01973 1332 Coils Coil 5 32 - -
Arst9g01973 1332 Gene3D - 547 829 IPR038718 -
Arst9g01973 1332 MobiDBLite consensus disorder prediction 275 296 - -
Arst9g01973 1332 Coils Coil 1212 1232 - -
Arst9g01973 1332 Coils Coil 189 209 - -
Arst9g01973 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 829 IPR027417 -
Arst9g01973 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1170 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01973 Arst-Chr9 53674545 53695021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01973 605 1132 RAD5 or RAD16-like Gene Family AT1G02670 25.180 3.47e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g01973 SNF2_N 1.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01973 K10779 - gmx:100794911 2014.19