Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01972 ATGGAGGGAAAAACCGAGGATGAGGTGGTAGATATTGAGAGTGGTTCTAGTGGTTCTTTCAATGATGATTCTGATGATGAGGGATCTTTGCCTCCTGAAGTTGATGATGATAGAGTAAATCTTGAGGAACCTTTGACTGAGGAGGAGATACAAGACCTTATTTCTGAGTTGTTAGAAGTAGAGAGCAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGAGTGATGTTAGACAAGAATTGCAGCAAACTCTGACAGAGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAACTGTGCTGGACGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTCGACGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAAGGAAGCTCCCAATGGTTGCCGCACTGAAGCATGGAAAAAGAGGAATCATTGGGTAGGGTTGCAGGCAACTACGGAAATTGCTGAATCAGTTGCTGATGCTGAGAAGTATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTTGAAGAGGGAGCTAGTGGATTTCTCCAAAAAAAAATTGGTGATGAAACCAAGGATCCTGTAAAGAAAGGAATGGAGGGAGATTGGGATTTGTTCAATAAAATAGTGTCTGATGGGAGTGGCACTGATGTTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACCCCACAGCAAGCTGCACTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTAGAGGAGATTGACGATGTTGATGGCAATTCGGCTGATCCATTTGTTGCAGCTGCGATAGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAGAGACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGTTGATAGGAAGCTTCAAATCCATTTGAAACAAAGGAGGCGTCGGAAGAAAAGTAAACAGAACGATAAACTTGAAGATTTTGATGCTGGTTACGATCTTGAAAAGGATAATGCTATGAGTACTGGTGACTTGGCTGATCCACCCAAATCTTTGTTGGATGATATTATTGAACAGCGGGGAACTAAGCGTTTGAATGATGGTGAGCTCGACACTGATAATAAAAAGTCTCGTACTATTAGTGATGACAGTGACGATGACACAGATGCCATTGAAGACAAGGTAGATAGGAATATGAGTACTCTAGAGGAAAAAGGCTTATTAAACAGTGGTGCTGATACTCTTCCTTCAGTGTGTCCAAATGAGAAATTTCACTGCACAATTTGTCATCAAGTGGCTCTTGAAGTTCACTCACACCCTCTGTTGAAGGTGATTATTTGTGGAGATTGCAATTGCTTAATGGAGGAAAAGATATGCCGAAAGGACCTGAGTCTTGATTCTCCCTCAAGTCATTGTGCATGGTGTGGAGGAAGCAGTGGATTAATTAATTGTAAATCATGCACAATGTTATTCTGCACCAACTGCATAAAGAAGAATCTTGGTGCAGAATCTCTTACTAAAGCTCAGGCCACTGGCTGGGATTGTTGTTTTTGCCAGCCAAATAGTCTGCAAAGACTGACACTGCTATTGGAGAAAGCTATGGGATCTACTGCTGAACTAGTTTCCAGCTCTAGCAGTGATTCAGAAAATTCAGATGATTCAGATGATTCGGATGAGTCTGATGCAGAGATTAATGCTACAATCAGCTCTAAGAGAAGGCGCAAAAAGAAGATTCGAAGGATACTCGATGATACGGAATTAGGTGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGGCCAGTTCTCTGCTTCACCAAATGAAATGAGCTCATCAAATTTATCCGAAGGGGCTAGTGTTGAAGTTCTTGGCGATGCGGCATCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCGAGCATCTCAGCCAAACTCAAAGCCCACCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAGTAGAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATTGCTTTCTTGTACACTGCAATGAGGTGTGTTGATTTGGGGTTAAGGACCGCACTTATAGTCACACCTGTCAATGTTCTGCATAATTGGCGGCAGGAGTTTATTAAGTGGAAGCCCTCAGAGTTAAAGCAACTCAGAGTCTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGTTGAGCTGCTTGCAAAGTGGAGAACCAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGTAATTTATCTTTTGGGAAGCATGTGAAAGACCGGAATGTGGCCAGAGAGATTTGCCATGCTTTGCAGGATGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATTAAAAATACAAGGGCTGATGTAACTCATGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCCCTGACTGGATCGCCCCTTCAAAACAATCTCATGGAATACTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGAAACCGCTTCCAGAATCCTATAGAGAATGGTCAACACACTAATTCGACTCTCACAGATGTGAAAATTATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGACTGTGGTGAAAAAGGATCTACCCCCCAAAACTGTCTTCGTGGTAACCGTCAAGCTTTCTTTGTTACAAAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGGTTCAGTAAAGACAGCGCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCGTTAGCCCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGACAAGGACTATGTAAGACAAGAAGAAGCTGTTGAGAATTTTATCGTGGATGACTGCAGCAGTGATGATAATTCTGATATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCGCAAAAGAAAGATGGTACTGGCTTTTTCGTAAAGGGTTGGTGGCATGATCTACTTCCTGGAAAGATTTATAGAGAGCCTGATCATGGTGGCAAAATGGTTTTGCTACTAGAGATATTAACCATAAGTTCTAGTGTGGGCGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACGCTAGACCTCATAGAACTTTATCTCTCAAAGATACCTCGACATGGCAAACCTGGGAAGCGTTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAGGATTGTTGAGAGATTTAATGAGCCCTCAAATAAGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGTTCTTTGGGTATTAACCTTCATTCTGCTAACCGTGTTGTTATAATTGATGGTTCTTGGAATCCAACATACGATCTGCAGGCCATCTATCGTGCTTGGAGGTATGGGCAGACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACCATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAGCAGTAGTAATACAGTTAAACATACAACACCACATTCAAATGGAAGTAGCAACTCTGATAAGCTAATGGAAAGCTTACTTAAAAATCATCAACCCCGTTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAGAAATCACTTGAATGGGAAGAAGTGGGGAGGGTACCAATTAGTGACCCCATGCCTGATCAAAAGGCAGAGATGGCTGCAAGTTCAAAACTACAACAGGTGAAAGACCCTCTTAGCATGGTGTCAAGTAGTAGAATAAGGAATCGTTTTAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATCAGGTGGGATGACTTGAAGATTACTAAATAG 4308 0.4197 MEGKTEDEVVDIESGSSGSFNDDSDDEGSLPPEVDDDRVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLAKVESDVRQELQQTLTEDDLETAVADEMATFKEEWETVLDDLETESANLLEQLDGAGIELPSLYKWIEKEAPNGCRTEAWKKRNHWVGLQATTEIAESVADAEKYLQVNRPVRRRHGKLLEEGASGFLQKKIGDETKDPVKKGMEGDWDLFNKIVSDGSGTDVSFGSKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSADPFVAAAIANERELDLSEEQKRQFKKVKEEDDAIVDRKLQIHLKQRRRRKKSKQNDKLEDFDAGYDLEKDNAMSTGDLADPPKSLLDDIIEQRGTKRLNDGELDTDNKKSRTISDDSDDDTDAIEDKVDRNMSTLEEKGLLNSGADTLPSVCPNEKFHCTICHQVALEVHSHPLLKVIICGDCNCLMEEKICRKDLSLDSPSSHCAWCGGSSGLINCKSCTMLFCTNCIKKNLGAESLTKAQATGWDCCFCQPNSLQRLTLLLEKAMGSTAELVSSSSSDSENSDDSDDSDESDAEINATISSKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASPNEMSSSNLSEGASVEVLGDAASGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIVESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVPRDRRVELLAKWRTKGGVFLIGYTAFRNLSFGKHVKDRNVAREICHALQDGPDILVCDEAHMIKNTRADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVVTVKLSLLQRKLYKRFLDVHGFSKDSAHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVRQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGKIYREPDHGGKMVLLLEILTISSSVGDKVLVFSQSIPTLDLIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNKRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGSSSNTVKHTTPHSNGSSNSDKLMESLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYKKSLEWEEVGRVPISDPMPDQKAEMAASSKLQQVKDPLSMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRWDDLKITK 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01972 1435 MobiDBLite consensus disorder prediction 555 583 - -
Arst9g01972 1435 Gene3D - 650 932 IPR038718 -
Arst9g01972 1435 CDD SF2_C_SNF 1066 1216 - -
Arst9g01972 1435 Coils Coil 108 135 - -
Arst9g01972 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1273 IPR027417 -
Arst9g01972 1435 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 700 883 IPR014001 -
Arst9g01972 1435 CDD ADDz_ATRX 437 535 - -
Arst9g01972 1435 Gene3D - 943 1294 IPR027417 -
Arst9g01972 1435 SMART ultradead3 674 895 IPR014001 -
Arst9g01972 1435 Pfam Helicase conserved C-terminal domain 1080 1205 IPR001650 -
Arst9g01972 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 932 IPR027417 -
Arst9g01972 1435 MobiDBLite consensus disorder prediction 1272 1297 - -
Arst9g01972 1435 Coils Coil 292 312 - -
Arst9g01972 1435 ProSiteProfiles ADD domain profile. 429 561 IPR025766 -
Arst9g01972 1435 Coils Coil 50 77 - -
Arst9g01972 1435 MobiDBLite consensus disorder prediction 378 405 - -
Arst9g01972 1435 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1253 IPR001650 -
Arst9g01972 1435 SMART helicmild6 1108 1205 IPR001650 -
Arst9g01972 1435 MobiDBLite consensus disorder prediction 1 45 - -
Arst9g01972 1435 PANTHER RAD54-LIKE 18 1431 IPR044574 GO:0016887
Arst9g01972 1435 PANTHER RAD54-LIKE 18 1431 IPR044574 GO:0016887
Arst9g01972 1435 MobiDBLite consensus disorder prediction 378 399 - -
Arst9g01972 1435 Coils Coil 1315 1335 - -
Arst9g01972 1435 Pfam SNF2-related domain 701 1001 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01972 Arst-Chr9 53674545 53696112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01972 708 1235 RAD5 or RAD16-like Gene Family AT1G02670 25.314 2.48e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g01972 SNF2_N 2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01972 K10779 - gmx:100794911 2156.33