Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01970 ATGACACTTGACCTGGAAACTGTCATCCACTTTTCGTATTCTTGTTCAGTTGGATTCCTTCCTATCGTTAAAACAACTGCATTAGAGATGGAGGGAAAAACCGAGGATGAGGTGGTAGATATTGAGAGTGGTTCTAGTGGTTCTTTCAATGATGATTCTGATGATGAGGGATCTTTGCCTCCTGAAGTTGATGATGATAGAGTAAATCTTGAGGAACCTTTGACTGAGGAGGAGATACAAGACCTTATTTCTGAGTTGTTAGAAGTAGAGAGCAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGAGTGATGTTAGACAAGAATTGCAGCAAACTCTGACAGAGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAACTGTGCTGGACGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTCGACGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAAGGAAGCTCCCAATGGTTGCCGCACTGAAGCATGGAAAAAGAGGAATCATTGGGTAGGGTTGCAGGCAACTACGGAAATTGCTGAATCAGTTGCTGATGCTGAGAAGTATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTTGAAGAGGGAGCTAGTGGATTTCTCCAAAAAAAAATTGGTGATGAAACCAAGGATCCTGTAAAGAAAGGAATGGAGGGAGATTGGGATTTGTTCAATAAAATAGTGTCTGATGGGAGTGGCACTGATGTTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACCCCACAGCAAGCTGCACTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTAGAGGAGATTGACGATGTTGATGGCAATTCGGCTGATCCATTTGTTGCAGCTGCGATAGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAGAGACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGTTGATAGGAAGCTTCAAATCCATTTGAAACAAAGGAGGCGTCGGAAGAAAAGTAAACAGAACGATAAACTTGAAGATTTTGATGCTGGTTACGATCTTGAAAAGGATAATGCTATGAGTACTGGTGACTTGGCTGATCCACCCAAATCTTTGTTGGATGATATTATTGAACAGCGGGGAACTAAGCGTTTGAATGATGGTGAGCTCGACACTGATAATAAAAAGTCTCGTACTATTAGTGATGACAGTGACGATGACACAGATGCCATTGAAGACAAGGTAGATAGGAATATGAGTACTCTAGAGGAAAAAGGCTTATTAAACAGTGGTGCTGATACTCTTCCTTCAGTGTGTCCAAATGAGAAATTTCACTGCACAATTTGTCATCAAGTGGCTCTTGAAGTTCACTCACACCCTCTGTTGAAGGTGATTATTTGTGGAGATTGCAATTGCTTAATGGAGGAAAAGATATGCCGAAAGGACCTGAGTCTTGATTCTCCCTCAAGTCATTGTGCATGGTGTGGAGGAAGCAGTGGATTAATTAATTGTAAATCATGCACAATGTTATTCTGCACCAACTGCATAAAGAAGAATCTTGGTGCAGAATCTCTTACTAAAGCTCAGGCCACTGGCTGGGATTGTTGTTTTTGCCAGCCAAATAGTCTGCAAAGACTGACACTGCTATTGGAGAAAGCTATGGGATCTACTGCTGAACTAGTTTCCAGCTCTAGCAGTGATTCAGAAAATTCAGATGATTCAGATGATTCGGATGAGTCTGATGCAGAGATTAATGCTACAATCAGCTCTAAGAGAAGGCGCAAAAAGAAGATTCGAAGGATACTCGATGATACGGAATTAGGTGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGGCCAGTTCTCTGCTTCACCAAATGAAATGAGCTCATCAAATTTATCCGAAGGGGCTAGTGTTGAAGTTCTTGGCGATGCGGCATCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCGAGCATCTCAGCCAAACTCAAAGCCCACCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAGTAGAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATTGCTTTCTTGTACACTGCAATGAGGTGTGTTGATTTGGGGTTAAGGACCGCACTTATAGTCACACCTGTCAATGTTCTGCATAATTGGCGGCAGGAGTTTATTAAGTGGAAGCCCTCAGAGTTAAAGCAACTCAGAGTCTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGTTGAGCTGCTTGCAAAGTGGAGAACCAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGTAATTTATCTTTTGGGAAGCATGTGAAAGACCGGAATGTGGCCAGAGAGATTTGCCATGCTTTGCAGGATGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATTAAAAATACAAGGGCTGATGTAACTCATGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCCCTGACTGGATCGCCCCTTCAAAACAATCTCATGGAATACTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGAAACCGCTTCCAGAATCCTATAGAGAATGGTCAACACACTAATTCGACTCTCACAGATGTGAAAATTATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGACTGTGGTGAAAAAGGATCTACCCCCCAAAACTGTCTTCGTGGTAACCGTCAAGCTTTCTTTGTTACAAAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGGTTCAGTAAAGACAGCGCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCGTTAGCCCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGACAAGGACTATGTAAGACAAGAAGAAGCTGTTGAGAATTTTATCGTGGATGACTGCAGCAGTGATGATAATTCTGATATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCGCAAAAGAAAGATGGTACTGGCTTTTTCGTAAAGGGTTGGTGGCATGATCTACTTCCTGGAAAGATTTATAGAGAGCCTGATCATGGTGGCAAAATGGTTTTGCTACTAGAGATATTAACCATAAGTTCTAGTGTGGGCGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACGCTAGACCTCATAGAACTTTATCTCTCAAAGATACCTCGACATGGCAAACCTGGGAAGCGTTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAGGATTGTTGAGAGATTTAATGAGCCCTCAAATAAGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGTTCTTTGGGTATTAACCTTCATTCTGCTAACCGTGTTGTTATAATTGATGGTTCTTGGAATCCAACATACGATCTGCAGGCCATCTATCGTGCTTGGAGGTATGGGCAGACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACCATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAGCAGTAGTAATACAGTTAAACATACAACACCACATTCAAATGGAAGTAGCAACTCTGATAAGCTAATGGAAAGCTTACTTAAAAATCATCAACCCCGTTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAGAAATCACTTGAATGGGAAGAAGTGGGGAGGGTACCAATTAGTGACCCCATGCCTGATCAAAAGGCAGAGATGGCTGCAAGTTCAAAACTACAACAGGTGAAAGACCCTCTTAGCATGGTGTCAAGTAGTAGAATAAGGAATCGTTTTAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATCAGGTGGGATGACTTGAAGATTACTAAATAG 4395 0.4191 MTLDLETVIHFSYSCSVGFLPIVKTTALEMEGKTEDEVVDIESGSSGSFNDDSDDEGSLPPEVDDDRVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLAKVESDVRQELQQTLTEDDLETAVADEMATFKEEWETVLDDLETESANLLEQLDGAGIELPSLYKWIEKEAPNGCRTEAWKKRNHWVGLQATTEIAESVADAEKYLQVNRPVRRRHGKLLEEGASGFLQKKIGDETKDPVKKGMEGDWDLFNKIVSDGSGTDVSFGSKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSADPFVAAAIANERELDLSEEQKRQFKKVKEEDDAIVDRKLQIHLKQRRRRKKSKQNDKLEDFDAGYDLEKDNAMSTGDLADPPKSLLDDIIEQRGTKRLNDGELDTDNKKSRTISDDSDDDTDAIEDKVDRNMSTLEEKGLLNSGADTLPSVCPNEKFHCTICHQVALEVHSHPLLKVIICGDCNCLMEEKICRKDLSLDSPSSHCAWCGGSSGLINCKSCTMLFCTNCIKKNLGAESLTKAQATGWDCCFCQPNSLQRLTLLLEKAMGSTAELVSSSSSDSENSDDSDDSDESDAEINATISSKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASPNEMSSSNLSEGASVEVLGDAASGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIVESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVPRDRRVELLAKWRTKGGVFLIGYTAFRNLSFGKHVKDRNVAREICHALQDGPDILVCDEAHMIKNTRADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVVTVKLSLLQRKLYKRFLDVHGFSKDSAHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVRQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGKIYREPDHGGKMVLLLEILTISSSVGDKVLVFSQSIPTLDLIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNKRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGSSSNTVKHTTPHSNGSSNSDKLMESLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYKKSLEWEEVGRVPISDPMPDQKAEMAASSKLQQVKDPLSMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRWDDLKITK 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01970 1464 MobiDBLite consensus disorder prediction 407 428 - -
Arst9g01970 1464 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 729 912 IPR014001 -
Arst9g01970 1464 SMART ultradead3 703 924 IPR014001 -
Arst9g01970 1464 Pfam SNF2-related domain 730 1030 IPR000330 GO:0005524|GO:0140658
Arst9g01970 1464 Coils Coil 1344 1364 - -
Arst9g01970 1464 MobiDBLite consensus disorder prediction 1301 1326 - -
Arst9g01970 1464 Pfam Helicase conserved C-terminal domain 1109 1234 IPR001650 -
Arst9g01970 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 967 1302 IPR027417 -
Arst9g01970 1464 Coils Coil 79 106 - -
Arst9g01970 1464 CDD SF2_C_SNF 1095 1245 - -
Arst9g01970 1464 PANTHER RAD54-LIKE 46 1460 IPR044574 GO:0016887
Arst9g01970 1464 PANTHER RAD54-LIKE 46 1460 IPR044574 GO:0016887
Arst9g01970 1464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1111 1282 IPR001650 -
Arst9g01970 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 961 IPR027417 -
Arst9g01970 1464 CDD ADDz_ATRX 466 564 - -
Arst9g01970 1464 Gene3D - 679 961 IPR038718 -
Arst9g01970 1464 MobiDBLite consensus disorder prediction 41 66 - -
Arst9g01970 1464 Coils Coil 321 341 - -
Arst9g01970 1464 SMART helicmild6 1137 1234 IPR001650 -
Arst9g01970 1464 MobiDBLite consensus disorder prediction 407 434 - -
Arst9g01970 1464 ProSiteProfiles ADD domain profile. 458 590 IPR025766 -
Arst9g01970 1464 Coils Coil 137 164 - -
Arst9g01970 1464 Gene3D - 972 1323 IPR027417 -
Arst9g01970 1464 MobiDBLite consensus disorder prediction 584 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01970 Arst-Chr9 53674545 53697139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01970 737 1264 RAD5 or RAD16-like Gene Family AT1G02670 25.179 2.20e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g01970 SNF2_N 2.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01970 K10779 - gmx:100794911 2159.8