Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst9g01612 | ATGGGTCGCATGAACACCAAAGAGAAAGTGCACGATCTCGAGTTGGAAAAAGCTCGCTTGATTAGCTTAGCCCTCGATTTCGGCTTCGACCAACCCTCCGCCACCAAATGCCTCCATCGCCTCATCGACCTCTACGGGGAGGATGGTCGGGATTTCATCACGGTGGAGCACTGCGGCGACGATTTTATTGCGGCGTTGGCGGAGTCGATGGAAGATGCAGAAGAATGGGATGATTTGCAGGGACTGGAATCGGAGGCTTGTGGTGCATTGACTCAGGTGCTTCACAAGACTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGGTGAGGTTTTCTGCGTTGATGCGACTGATGATTCGCCTTGGCGGCGGAAGCAGAAGGGGAAAGTGGTGGAGTTGGTTTCGAGCGAGGAGGATGAAGATAAGGATGTGGATTTCAGTTTTCTGATGGGAAGAGGGAATTGTGTCACTCCTGCTTCTGCGAAATCAATGGATTGCAGAAGTGGCATCACTCAAGGCTCAATTTCATCCACATCCAGCAAAACAAAATTCTACTCAGCATCAAAGGAAGAAAATAATACTCTTAGCTATGACGAATTGCAGGCTCTAGATGATATTGAATTGGCAAATGTCGTTATCTTTGGTAATAGGGCATTTCGACCATTGCAGCATCAAGCATGCAAAGTAACTTTGGCAAAGCAAGATTCTTTTATCCTTATGCCTACTGGAGGTGGTAAATCTCTATGCTATCAGCTTCCAGCAACCCTTCAACCAGGTGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAGGATCAGATAATCACACTAAACCTTAAGTTTGGTATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTAAGGAAAGACAAACCATCTTGCAAGCTATTGTATGTGACACCTGAGAGAATTGCTGGCAACCAACCATTTATTGAGATTCTTAAATGCCTGCATCGCAAGGGACAACTTGCAGGTTTTGTTGTTGATGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGACTATCGCGGATTAGGATCACTTAAGCAAAACTTTCCTCGTGTACCTGTCATGGCATTGACAGCAACTGCAACCCACTCAGTTCGTGAGGACATTTTGAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAACTTAAAGTATGAAGTGATTGCAAAGACTAAGGAACCGCTGAAGCAGCTGGGACAGCTGCTAGTGGATCGTTTCAGGAATCAATGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCCAAATTTTTGAATGAGACATGTCAGACTAAAACGGCGTATTACCATGCTGGCATGGCTGCCCGCCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAATCTGATGTTCGCTTCGTTGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGAGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCCGAGTAGTATGCATGATAAGAAATGGTCAAGGATATAAAAAGGAGAGCTTTAAGACAGCCATGGATCAAGCGAAAAAGATGCAACAGTACTGTGAACTTAAGGTTGAATGTCGGAGACAAACTTTACTCAAACACTTCGGAGAATCTTTTGACAGAAAAGGCTGCAAGTATGGATCTAATCCATGTGATAACTGTCTCAACACTGCACTATGA | 1881 | 0.446 | MGRMNTKEKVHDLELEKARLISLALDFGFDQPSATKCLHRLIDLYGEDGRDFITVEHCGDDFIAALAESMEDAEEWDDLQGLESEACGALTQVLHKTGVGGGGGGGGGGGGGDDGEVFCVDATDDSPWRRKQKGKVVELVSSEEDEDKDVDFSFLMGRGNCVTPASAKSMDCRSGITQGSISSTSSKTKFYSASKEENNTLSYDELQALDDIELANVVIFGNRAFRPLQHQACKVTLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQPFIEILKCLHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNETCQTKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKSDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMDQAKKMQQYCELKVECRRQTLLKHFGESFDRKGCKYGSNPCDNCLNTAL | 626 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst9g01612 | 626 | Gene3D | - | 417 | 624 | IPR027417 | - | |
| Arst9g01612 | 626 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 264 | 562 | IPR027417 | - | |
| Arst9g01612 | 626 | NCBIfam | RecQ family ATP-dependent DNA helicase | 219 | 623 | IPR004589 | GO:0004386|GO:0006310 | |
| Arst9g01612 | 626 | CDD | SF2_C_RecQ | 417 | 550 | - | - | |
| Arst9g01612 | 626 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 348 | 357 | IPR002464 | - | |
| Arst9g01612 | 626 | SMART | helicmild6 | 459 | 541 | IPR001650 | - | |
| Arst9g01612 | 626 | FunFam | ATP-dependent DNA helicase | 417 | 624 | - | - | |
| Arst9g01612 | 626 | Gene3D | - | 182 | 416 | IPR027417 | - | |
| Arst9g01612 | 626 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 233 | 409 | IPR014001 | - | |
| Arst9g01612 | 626 | Pfam | DEAD/DEAH box helicase | 227 | 395 | IPR011545 | GO:0003676|GO:0005524 | |
| Arst9g01612 | 626 | Pfam | Helicase conserved C-terminal domain | 434 | 540 | IPR001650 | - | |
| Arst9g01612 | 626 | CDD | DEXHc_RecQ | 219 | 416 | - | - | |
| Arst9g01612 | 626 | SMART | ultradead3 | 221 | 425 | IPR014001 | - | |
| Arst9g01612 | 626 | FunFam | ATP-dependent DNA helicase | 206 | 416 | - | - | |
| Arst9g01612 | 626 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 202 | 622 | - | - | |
| Arst9g01612 | 626 | Pfam | RecQ zinc-binding | 553 | 622 | IPR032284 | - | |
| Arst9g01612 | 626 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 431 | 584 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst9g01612 | Arst-Chr9 | 27092787 | 27097566 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst9g01612 | 449 | 539 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 30.769 | 3.99e-08 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst9g01612 | K10899 | - | gmx:100806070 | 940.643 |