Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01551 ATGTTGGATTCAGCTTCTCAAAATACTGGATTGGGGTCCTCAAGGCGCGATACTCTTTCTTTTGATAATGCAAGAAGTAACTCTCGACAGTATAATGATCCATTTAGCCGTGTGACTAGTAGTTTTGTTTCCGAAGATATCCCTGACGCCGTGTCCGAGAAAGATCTGGGTAATGAGTATTTCAAGCAGAAAAAATATAAGGAAGCTATAGACTGCTATTCAAGAAGCATTGCCTTCTCGCCTACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACATCTAGAAAAGAACTCGCGAAATTTAAAGAATCCATGGAGGATGCGGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATTAAGAAACAGCATGCTGATGCCAAGTCTTTGTACGACAAAGCAATGCTTGATAAAGTATCTGGAGCTCTGAAAAGCACTGTAAAGGGCACTCAAAAAGAAGTGAAGTTGGACACAAAAAAGAATGGAGGCAGCATCCATCCCATTTCACATATTACTCAAAAGTCCGGGCCAGCTAAGGGTAATGAGCAGCAAATTCCAGCTAAAGAGTCATACATAATGGAGGAGGTAGATAGTAATAAAATCAGAAGCAGGGCTCAAAGACAAGAGGCAGATGGTTCTAGTTCAAGCAACAACGTCCAGCATGTTAAGAGAAATCAGAAAGGTAGTAAGCAGCACGTGCAAACATCTATTCAACAACTTGCTTCTCGTGCAGCTTCTCTAGCTACGGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGACTTGCCTGTTAAAGGCCATATCTCCTCATGAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCTTGCTGATTGACATCATCAAGTGTGTGGCATCTTTTTTCAATGAACAAATGGATCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTGATGTGCCTTCCATCAACAGATAAAGATGACTTACGCAAGATCTGGGACGAAGTGTTCTGTGGCGAGGCAACGCCAATGGAGTTTGCGGAGATTCTGGACAACCTGCGATCGAAATACTGCCTTGGGCAGTAG 1248 0.4255 MLDSASQNTGLGSSRRDTLSFDNARSNSRQYNDPFSRVTSSFVSEDIPDAVSEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELAKFKESMEDAEFALRLEPNNQEIKKQHADAKSLYDKAMLDKVSGALKSTVKGTQKEVKLDTKKNGGSIHPISHITQKSGPAKGNEQQIPAKESYIMEEVDSNKIRSRAQRQEADGSSSSNNVQHVKRNQKGSKQHVQTSIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQTCLLKAISPHELPKIFKNALSTALLIDIIKCVASFFNEQMDLAVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCGEATPMEFAEILDNLRSKYCLGQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01551 415 Pfam Potential Monad-binding region of RPAP3 291 380 IPR025986 -
Arst9g01551 415 SUPERFAMILY TPR-like 43 162 IPR011990 GO:0005515
Arst9g01551 415 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Arst9g01551 415 MobiDBLite consensus disorder prediction 241 269 - -
Arst9g01551 415 MobiDBLite consensus disorder prediction 233 269 - -
Arst9g01551 415 MobiDBLite consensus disorder prediction 182 216 - -
Arst9g01551 415 SMART tpr_5 84 116 IPR019734 GO:0005515
Arst9g01551 415 SMART tpr_5 117 150 IPR019734 GO:0005515
Arst9g01551 415 SMART tpr_5 50 83 IPR019734 GO:0005515
Arst9g01551 415 MobiDBLite consensus disorder prediction 1 26 - -
Arst9g01551 415 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Arst9g01551 415 PANTHER OS05G0129900 PROTEIN 23 414 - -
Arst9g01551 415 Pfam Tetratricopeptide repeat 54 82 IPR001440 GO:0005515
Arst9g01551 415 Pfam Tetratricopeptide repeat 83 113 IPR001440 GO:0005515
Arst9g01551 415 MobiDBLite consensus disorder prediction 198 213 - -
Arst9g01551 415 Gene3D Tetratricopeptide repeat domain 39 148 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01551 Arst-Chr9 24268365 24273439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01551 54 146 U-box Gene Family AT3G07370 31.915 5.19e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01551 K23002 - gmx:100784528 565.074