Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01444 ATGTCATCCTCAAGGCCTAGCCAATCTTCTAGCAATTCGGGGAGATCAAGACATAGCGCTAGAATTATTGCTCAGACCACTGTAGATGCAAAGCTCCATGCTAGTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCTAGTTCGGTGCGCGCCTCCGGCTCAGCTGATGGAGAAAATCAACCAAGAACAGATAAAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAGATGATTCAACCCTTTGGGTGCTTGCTGGCCTTGGATGAGAAAACATGCAAGGTGATTGCTTACAGTGAGAATGCACCAGAGATGCTGACCATGGCGAGTCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACCGACATAAGAACTATTTTCACTGCTCCAAGTGCTTCGGCATTGCAGAAAGCACTAGGATTTGGAGAAGTTCATCTTCTTAACCCCATCCTAGTTCATTGCAAGACTTCTGGGAAACCCTTCTATGCTATTCTCCATCGTGTTACTGGTAGTTTGATTATTGACTTTGAGCCCGTCAAGCCTTATGAAGTTCCTATGACTGCAGCAGGTGCTCTGCAATCCTACAAGCTTGCTGCGAAAGCAATCACCCGATTGCAGTCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATACAATGGTTCAAGAAGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGTTAACAAAGCCAGGACTTGAACCATATCTTGGGTTGCACTATCCGTCCACTGATATTCCCCAGGCTGCACGTTTTTTGTTCTTGAAGAACAAGGTCCGTATGATTGTTGATTGTCATGCAAAACATGTAAAGGTTGTTCAAGATGAGAAGCTGCCATTCGATTTGACTTTGTGTGGTTCAACCTTAAGAGCTCCTCATAGTTGCCATTTGCAATACATGTCAAACATGGATTCAATTGCTTCCCTAGTTATGGCAGTTATAGTCAATGACAGCGATGAAGATGCGGACAACTCTGATGCTGTTCAGCCACAAAAGAGAAAGCGACTCTGGGGCTTAGTTGTTTGTCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTGACACAAGTATTTGCCATCCATGTCAACAGAGAAATAGAGTTAGAATATCAGATTACTGAAAAGAATATCCTTCGCACTCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGAATTGTATCACAAAGCCCTAATATAATGGACCTAGTTAAATGTGATGGGGCTTCCCTCTTGTATAAAAACAAGGTATGGAGATTAGGAGTAACACCTACTGAATCTCATATAAGAGAGATAGCTTTGTGGTTGTCTGAGCACCATATGGATTCCACAGGTCTTAGTACAGATAGCTTGTATGATGCCGGGTTCCCAGGGGCTCTGTCTCTTGGTGATGTAGTATGTGGAATGGCAGCGGTTAGAATAACTGAGAAAGACATAGTTTTCTGGTTTCGATCACACACAGCTGCAGAAATCAGATGGGGTGGTGCAAAGCATGACCCTGGTGAAAAGGACGACGGCAGGAGGATGCATCCACGGTCATCTTTCAAGGCTTTCCTTGAAGTTGTTAAGTCAAGGAGCTTACCGTGGAAAGACTACGAGATGGATGCTATTCATTCATTGCAACTAATACTAAGAAATGCATTCAAAGAGATGGATAGTATGGACATAACCACAAATGCAATAAATACAAGGCTGAATGATTTGAGGATTGAAGGGATGCAGGAACTGGAAGCCGTGACAAGTGAGATGGTTAGATTAATTGAAACTGCAACAGTACCTATTCTGGCTGTAGATGTTGATGGGCTGGTTAATGGATGGAATATAAAGATTGCCGAATTGACTGGCCTTTCGGTTGGTGATGCTATAGGGAAGCATCTTCTCACGCTCGTTGAGAACTCTTCAGTTGGTATAGTCAAGAAGATGCTTGAGATGGCATTGAAAGGTGAAGAAGAGAAAAACGTCCAATTTGAGATCAAAACACATGGGTCTAAAGTTGATTGTGGTCCTATTAGATTGGTAGTTAATGCTTGCGCAAGCCGGGATATTCATGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGACATCACAGCTCAGAAGACTGTCATGGATAAATTTACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAATCCCAACCCATTGATCCCCCCAATATTTGGAACTGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGACAAAGGTGACCGGATGGAAGAGAGAAGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACTCAGATGGCTTGTTGTCGTCTTAAGAACCAAGAAGCTTTTGTTAATTTTGGTATTGTACTTAATAAAGCCATGACCGGTTTGGAGACAGCAAAGGTTGCTTTTGGTTTCTTTGCTCGTAGTGGGAAGTATGTAGAATGCCTGCTTTCGGTGAGTAAAAAATTGGACGTCGAAGGTGTAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTGCATGTTCAGCGAATATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTATATGAAGAGGCAGATCAGGAATCCTTTATCCGGGATGATGTTTTCGCGGAAAATGTTGGAGGCCACTGAGTTGGGAGCGGAACAAAAGCAACTCCTACACACCAGTGCTCAGTGCCAGTGCCAGCTTAGCAAAGTTCTTGATGACTCAGATCTTGACAGCATCATTGATGGTTACTTGGATCTTGAGATGGCTGAATTCACTCTGCATGATGTATTGGTTGCTTCCCTTAGTCAAGTAATGACAAAGAGTAACACCAAAGCTATCCGAATAGTCAACGATGTCAAAGAGCAAATTGTGACAGAAACCTTATACGGTGATAGTCTTAGGCTTCAGCAGGCCATAGCTGACTTCTTATTGATTTCCATAAACTTCACACCCAATGGAGGTCAAGTTGTAGTAACAGCCACTCTGACCAAAGAACAAATAGGGCAATCTGTCCATCTTGTTAATTTGGAGCTCAGCATAACACATGGTGGTAGTGGGGCCATTCTAAAGCTGATGAATGGAGATGTGCGTTATGTAAGGGAAGCAGGCAAATCATCTTTTATCCTATCTGCTGAACTTGCCGCAGCTCATAAGTTGAAAGATTAG 3294 0.4344 MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHASFEESGSSFDYSSSVRASGSADGENQPRTDKVTTAYLHHIQKGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMASHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVHLLNPILVHCKTSGKPFYAILHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAELTKPGLEPYLGLHYPSTDIPQAARFLFLKNKVRMIVDCHAKHVKVVQDEKLPFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVIVNDSDEDADNSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVNREIELEYQITEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGASLLYKNKVWRLGVTPTESHIREIALWLSEHHMDSTGLSTDSLYDAGFPGALSLGDVVCGMAAVRITEKDIVFWFRSHTAAEIRWGGAKHDPGEKDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKEMDSMDITTNAINTRLNDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLSVGDAIGKHLLTLVENSSVGIVKKMLEMALKGEEEKNVQFEIKTHGSKVDCGPIRLVVNACASRDIHDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNAAMTKVTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETAKVAFGFFARSGKYVECLLSVSKKLDVEGVVTGVFCFLQLASPELQQALHVQRISEQTALKRLKALTYMKRQIRNPLSGMMFSRKMLEATELGAEQKQLLHTSAQCQCQLSKVLDDSDLDSIIDGYLDLEMAEFTLHDVLVASLSQVMTKSNTKAIRIVNDVKEQIVTETLYGDSLRLQQAIADFLLISINFTPNGGQVVVTATLTKEQIGQSVHLVNLELSITHGGSGVXILKLMNGDVRYVREAGKSSFILSAELAAAHKLKD 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01444 1098 Pfam GAF domain 218 401 IPR003018 GO:0005515
Arst9g01444 1098 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Arst9g01444 1098 CDD PAS 761 872 IPR000014 -
Arst9g01444 1098 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Arst9g01444 1098 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Arst9g01444 1098 SMART HisKA_10 894 959 IPR003661 GO:0000155|GO:0007165
Arst9g01444 1098 Gene3D - 957 1068 IPR036890 -
Arst9g01444 1098 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Arst9g01444 1098 Gene3D - 406 579 IPR043150 -
Arst9g01444 1098 FunFam Phytochrome 406 537 - -
Arst9g01444 1098 SMART gaf_1 218 411 IPR003018 GO:0005515
Arst9g01444 1098 MobiDBLite consensus disorder prediction 1 23 - -
Arst9g01444 1098 Pfam PAS fold 69 185 IPR013654 GO:0006355
Arst9g01444 1098 ProSiteProfiles Histidine kinase domain profile. 901 1063 IPR005467 -
Arst9g01444 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Arst9g01444 1098 PANTHER OS08G0260000 PROTEIN 67 955 - -
Arst9g01444 1098 PIRSF Phytochrome_conventional 1 1065 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst9g01444 1098 PIRSF Phytochrome_conventional 1063 1098 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst9g01444 1098 PIRSF Phytochrome_conventional 1 1065 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst9g01444 1098 PIRSF Phytochrome_conventional 1063 1098 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst9g01444 1098 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Arst9g01444 1098 Gene3D PAS domain 74 321 - -
Arst9g01444 1098 Gene3D PAS domain 611 748 - -
Arst9g01444 1098 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Arst9g01444 1098 MobiDBLite consensus disorder prediction 1 26 - -
Arst9g01444 1098 SUPERFAMILY GAF domain-like 198 399 - -
Arst9g01444 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Arst9g01444 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Arst9g01444 1098 Pfam PAS fold 620 734 IPR013767 GO:0006355
Arst9g01444 1098 Pfam PAS fold 750 872 IPR013767 GO:0006355
Arst9g01444 1098 CDD PAS 628 734 IPR000014 -
Arst9g01444 1098 SMART pas_2 619 685 IPR000014 -
Arst9g01444 1098 SMART pas_2 749 818 IPR000014 -
Arst9g01444 1098 Gene3D - 199 562 IPR029016 -
Arst9g01444 1098 Gene3D PAS domain 763 875 - -
Arst9g01444 1098 FunFam Phytochrome 613 744 - -
Arst9g01444 1098 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Arst9g01444 1098 SUPERFAMILY GAF domain-like 409 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01444 Arst-Chr9 20702176 20708713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01444 1 1095 Histidine Kinase Gene Family AT1G09570 78.253 0.0 1852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01444 K12120 - gmx:100790763 1895.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01444 9 20702176 20708713 Arst9g01444 9 20702176 20708713 ECH
Arst6g00687 6 6103426 6107782 Arst9g01444 9 20702176 20708713 PCT