Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01402 ATGACAAGAAAGAAGGTGAAGTTGGCTTACATTCCTGATGACTCAGCAAGAAAAGCAACTTTCAAGAAAAGGAAGAGGGGAATTCTGAAGAAGGTGAATGAACTCAGCATTCTATGCGGCATTGAAGCTTGTGCTATAATCTCGAACCCTTTTGAATCTGAAGAAGCAGAGGTTTGGCCAGATCCAGAGAGGGCCAGAGAAGTGATTGAGAAGTACAGTAATTCATCTGTGATTGACGAAAGTAAGAACATGAATCAAGAAAGCTTCATGCTGCAGAGAATCGCTAAAGCGAAGGAGTTGCTGAAGAAGAAGCGTAAGGAGAATCGTGAAAAGGAGATGCTTCTTTCCATGTATAAGTACATGAAAAGTGATCAAGAACTACCGGATAACATGACTGTTGCGGATTTGAAACAACTTGATAATCTCATTGATCAGAGTATGAAGGACATTGAAATTAAGATGGTTCTTGAAGATGATGATGAATAG 486 0.3971 MTRKKVKLAYIPDDSARKATFKKRKRGILKKVNELSILCGIEACAIISNPFESEEAEVWPDPERAREVIEKYSNSSVIDESKNMNQESFMLQRIAKAKELLKKKRKENREKEMLLSMYKYMKSDQELPDNMTVADLKQLDNLIDQSMKDIEIKMVLEDDDE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01402 161 Coils Coil 91 117 - -
Arst9g01402 161 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst9g01402 161 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst9g01402 161 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Arst9g01402 161 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Arst9g01402 161 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Arst9g01402 161 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Arst9g01402 161 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst9g01402 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Arst9g01402 161 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01402 Arst-Chr9 19883656 19884418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01402 1 150 Type I MADS-box Gene Family AT5G48670 48.344 3.34e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst9g01402 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01402 - - gmx:100792290 186.808