Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01400 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCATTTACGCGAATGATTGTTCTTTGGAGCAAATTGTGGTGAAAGAAGGATCATCGTCAAGTATAAGTAGTAGTATCATAACAACGAAGAAGACACCCTCAAAAGAAAAAGATAATAATAAACACGAAGCGGCAGCAGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCAGCAACAACTACTTTCAAGAAACCAAGAATAGCAGACTCATCATTATTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTCTCCGCTTTTTTAAGACCTTCAATGCTTAGTCAGAATAATTCTGTTTCACGTGAGGCTGATAACAACAAAGAGGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGTAATAATAATAAGAGGAAAGTGGTGGATAACGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAATACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTTAAGCGAGAATGATGAAGACATAGAAGATGTTACGAAGGATATTAAGAATGCTCGGCGGGAGGGCAATAATGGACAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAACAGTTAATGGGTTTGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATAGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTCATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAATAAGGCTAACAATCTTTGTACACAACCGCCACTACTTCAAACAACCAATAATATCTCAGCTCTAAAGTAG 1125 0.4 MAEKKLELFRAGMNPTSIYANDCSLEQIVVKEGSSSSISSSIITTKKTPSKEKDNNKHEAAAAASQFSYTSLYNSSSSAATTTFKKPRIADSSLLNQQDFAAGKLMNFSAFLRPSMLSQNNSVSREADNNKEEPFPEKQLKSVSNNNKRKVVDNGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYLSENDEDIEDVTKDIKNARREGNNGVRRSRNAETHNLYERQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQQLMGLRPGINIPCNMAQFNSIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTHPMLGNNNNNKANNLCTQPPLLQTTNNISALK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01400 389 Gene3D - 212 271 IPR036638 GO:0046983
Arst9g01400 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 293 IPR036638 GO:0046983
Arst9g01400 389 Coils Coil 192 212 - -
Arst9g01400 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Arst9g01400 389 PANTHER TRANSCRIPTION FACTOR PIF3 140 365 IPR044273 GO:0003700|GO:0006355
Arst9g01400 389 Pfam Helix-loop-helix DNA-binding domain 224 270 IPR011598 GO:0046983
Arst9g01400 389 CDD bHLH_AtPIF_like 221 283 IPR047265 -
Arst9g01400 389 SMART finulus 227 276 IPR011598 GO:0046983
Arst9g01400 389 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01400 Arst-Chr9 19845274 19847743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01400 51 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.386 9.45e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst9g01400 HLH 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01400 K12126 - gmx:100818543 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01400 9 19845274 19847743 Arst9g01400 9 19845274 19847743 ECH
Arst6g00722 6 6474629 6476803 Arst9g01400 9 19845274 19847743 PCT