Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01251 ATGCTGGGAACTAGTGATCAATCAGAAGTCTTTTGTGGTGTTCACTTCGTTCTTTTTGGTTTCAGTCCCGAGGATGAAACCGAGGTTCGGTTCAAGCTTGTGAACGGTGGTGCAGTGGATGAAGGCAAGTACAATGGAAGTTGCACGCACGTCATTGTCGATAAGATCATATATGATGATCCTGTGTGTATTGCTGCCAGAAACGATGGAAAGACAGTGGTGACTAAATTATGGGTTGATCATAGCTCTGATATTGCAATGCCCGTCGATGCTTCCTCCGTTATGTACAGACCTCTTAAAGATTTAAATGGAATACCTGGTGCCCAGAATTTGGTTGTGTGCTTGACTGGTTATCTACGACAGGATCGTGATGATATTATGACAATGGTTGACCTCATTGGTGCAACATTTCTTAAGCCCTTGGTGGCAAACAGGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGAATGGGAACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAATTCTGGGCGCTTCTTCCAGAAGAAAATTACAACAAGAGTGGCTATGAACTAGAGATTATGAAGTTAGAAGCTAAGGATTCTGATGAAGAAACTGAAGATTTTGATCTGGGGCAATCTGAGAGAAATATAAGCAGAAGTCCCCTCACTGCAAAATTTGGTGTTGAGGCAACTAGTGGCTTATTAAAATCAGATCGAGAGCTTTCAAGTGCCCAGCCAGAATCTACTAGTCTCAAGAATTCACCAAAAGTTGATAATAGTAAAGAATCTTCAGTTATTCAAGGTGCTACATCATGTCAGATACCTGAGACAGATGTTAAGATCAGGGAGTCAAAGAAGGCCAATTCTCCAAAGACAGGCTGCCAGGATGTTCTCATAACTGAAAAAGCAGAACCACATGCTGAAACTTTTAATAAGCTGGCCAATGATTTCGGATCACCATCTACTGCAAGTGCTGAAAGGGTCACACGTTCTGAAGCAAAGCTCAGTTCTATCAAGTATTATTCTAAGAACAAAAGGGGATTCACTCTTCCAAGGAGCTTAAATGATGGTTTGGATAATGGAGCTGGATCTACTGTGTCACCTTTGGCTGATTTGAAATCGGGAAACAAACATAAAACCCCGTCCAATATGGTATTAAATGGCAGTGGGGGAATCAAATCAACCAGTGCTAAAAATTCTGGGGATGTGACAATTGGTAAATTGCCGCAAAAAAGGGTAAACGAAGCTGCTTCTAATACATTAAAATCAAGGAAACTTACTTCCGATGCAAACTTATTTGTCGAGAAAACCACTTCAGAAAATGGTAAATCTGAAGCACGAAAAGTGACATCTATGGTTGAGGAACCATCCAAGTCTGAACCCTGTTTTTCTGCTGGAAAAGATAGTTTTGACAAACCCAACAAAAACTCATTTTCTAAATCCATAGCTTCTATATCCAATTCCCTATCATTTGATGAGCCTTTTACAAGAGATATAAGCCCAAAGTCAGCTCGAAGTGATAAAGCCTATCAGACTGAGTCTAAAATTAATGGGAAGCATGAAATTGCGGGTCATGGAATGGAACAAGTTGCTGGTAATGAAGTTGAGAAACACAAAGTTGCAAAAAATCTGGAGGGGTCCCCTGACAATAAGAACCCTCTGAATGGGGAATCCCCAAATTTAGATTTAGGCAATGAAGAAAGTACTAAGCTGATTAAAAGATCACCCCGCAAGAAATCAGTTGCCAAGAGAAGTTTTGGCTCTAAGCCAAAAGTTGGTGCTACTGCTAAACAGAAAACACTAGTTTCCTCAAACAGGACCATCCAGCAAGGTGAAGCTGTAAACTTTTCCAGTCGAATCAAAGAGGTACCAATTGACAATGGCGATAAACCTCAACCTATGACTGATGATAATAATAAGTCAGAGGAGCAAGAAACTGTTGTTAAACATGCAGAAGATGCCAATGGCAGACTTGAAACTATGGATGATGAAACAGAGGCTCCTGATGATAAATGTGAATTTGAGCTGGGAATGAAACACGATGAAAATAAAAACAAAGCTGATGAAACAGCAGAAAAGTCAGAAGACATTCACCATGTAACAGAATGTGAAGCAGCAGTGCCTGAGAAGGAAACTGCAGAGTTAACTGAAAAAGAGAAGGCACCTTCAGTAGATGACTCAACCATGAAACGCGAAGTAAAACATCAAGTGAAAAAGCGTCCTCTAAGTATTGCCAAGAAGGCCACTGTTGCAAAGGGACTACAGAAATCTAAAGTGGCACTGTCTGAGAATAAGATAAGCATGGAACGGGAAAATGTGGCACGAATGAAATCTGCAGAAGAAGTATCTCATGCTACAGATGCGAGCAACAAATCCTTCGCACCAAGAAAGCCATTTGGAAATTCAGAAGAACAGAAGGAAAATAGACCAATTGATGAGGGAGAGCAGGATATGCCTGAGGCCAAATCTGTTGCCAATCGAACTAATAAATTGAGTTCAAAGCCAGAAAAAATAAACCCCAAGCAAACAGGTTATAATCCACCTATGTCAGAAGCTAACAAAAGATTGAAAACTGAACCACCATGTTTCATATTAACGGGGCATCACTTTCTGAGAAAGGATTTCCAACAATTGATAAAGAAGTTAAAGGGCAAAGTTTGCCGGGATTCTCATCAGTGGTCATATCAAGCAACCCACTTCATAGCACCAGAGCCTCTACGCAGGATAGAGAAATTTTTTGCTGCTGCGGCATCAGGAAGGTGGATTCTGAAAACTGATTTCTTAACTGCTAGCAATCAGGCAGGGGAATTTGTGGAAGAGGAACCTTATGAGTGGCACGATATTGGTCTCAACGAGGATGGCACGATCGATATGGAGGCTCCTAGAAAGTGGCGGCTGCTGAAAAAGCGAACAGGTCATGGTGCCTTCTATGGAATGCGCATTATTGTGTATGGTGATTGCATCACTCCACCTTTGGATACTCTGAAGCGAGTGGTCAAAGCTGGAGACGGAACAATACTAGCTACCTCTCCTCCTTACACGCGCTTCCTTGGTACCGGAATCGACTATGCCATAGTTACTCCTGGAATGCCACGTGTCGACCTGTGGGTACAAGAGTTCTTAAGATACGAGATACCTTGCATTTCGGCTGACTACTTAGTCGAATATGTATGCAAACCAAGTTCCTCACTTGAGAAACATGTATTATATGACACTCATGTTTGGGCAGAAAGGTCATTTTCCAAACACCAGAATAGAGCAGAAGAGACCACTGATATTGAAGAATCAATTAGTAGCACTCCTGAAAGCAACGATATAGCTTGTGAAGTTTGTGGATCAAGGGATAGAGGGGATGTGATGCTGATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACACATATTGATTGTTGTGATCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCTCTAAATGCATTGTTAAACGAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGTGGCTTCTCCAAGAGTAAGAGAAAATGA 3570 0.4143 MLGTSDQSEVFCGVHFVLFGFSPEDETEVRFKLVNGGAVDEGKYNGSCTHVIVDKIIYDDPVCIAARNDGKTVVTKLWVDHSSDIAMPVDASSVMYRPLKDLNGIPGAQNLVVCLTGYLRQDRDDIMTMVDLIGATFLKPLVANRVTHLVCYKFEGEKYELAKRMGTIKLVNHRWLEDCLKFWALLPEENYNKSGYELEIMKLEAKDSDEETEDFDLGQSERNISRSPLTAKFGVEATSGLLKSDRELSSAQPESTSLKNSPKVDNSKESSVIQGATSCQIPETDVKIRESKKANSPKTGCQDVLITEKAEPHAETFNKLANDFGSPSTASAERVTRSEAKLSSIKYYSKNKRGFTLPRSLNDGLDNGAGSTVSPLADLKSGNKHKTPSNMVLNGSGGIKSTSAKNSGDVTIGKLPQKRVNEAASNTLKSRKLTSDANLFVEKTTSENGKSEARKVTSMVEEPSKSEPCFSAGKDSFDKPNKNSFSKSIASISNSLSFDEPFTRDISPKSARSDKAYQTESKINGKHEIAGHGMEQVAGNEVEKHKVAKNLEGSPDNKNPLNGESPNLDLGNEESTKLIKRSPRKKSVAKRSFGSKPKVGATAKQKTLVSSNRTIQQGEAVNFSSRIKEVPIDNGDKPQPMTDDNNKSEEQETVVKHAEDANGRLETMDDETEAPDDKCEFELGMKHDENKNKADETAEKSEDIHHVTECEAAVPEKETAELTEKEKAPSVDDSTMKREVKHQVKKRPLSIAKKATVAKGLQKSKVALSENKISMERENVARMKSAEEVSHATDASNKSFAPRKPFGNSEEQKENRPIDEGEQDMPEAKSVANRTNKLSSKPEKINPKQTGYNPPMSEANKRLKTEPPCFILTGHHFLRKDFQQLIKKLKGKVCRDSHQWSYQATHFIAPEPLRRIEKFFAAAASGRWILKTDFLTASNQAGEFVEEEPYEWHDIGLNEDGTIDMEAPRKWRLLKKRTGHGAFYGMRIIVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVTPGMPRVDLWVQEFLRYEIPCISADYLVEYVCKPSSSLEKHVLYDTHVWAERSFSKHQNRAEETTDIEESISSTPESNDIACEVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCSKCIVKRNCSNSPKKRKKGGFSKSKRK 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01251 1189 SMART PHD_3 1114 1166 IPR001965 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 807 827 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 376 410 - -
Arst9g01251 1189 SMART BRCT_7 106 183 IPR001357 -
Arst9g01251 1189 SMART BRCT_7 862 942 IPR001357 -
Arst9g01251 1189 SMART BRCT_7 8 86 IPR001357 -
Arst9g01251 1189 SMART BRCT_7 980 1067 IPR001357 -
Arst9g01251 1189 ProSiteProfiles BRCT domain profile. 879 952 IPR001357 -
Arst9g01251 1189 Gene3D BRCT domain 99 223 IPR036420 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 244 277 - -
Arst9g01251 1189 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 687 1181 IPR044254 -
Arst9g01251 1189 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 687 1181 IPR044254 -
Arst9g01251 1189 Gene3D BRCT domain 2 93 IPR036420 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 445 481 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 505 519 - -
Arst9g01251 1189 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 376 411 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 499 519 - -
Arst9g01251 1189 Pfam PHD-finger 1115 1167 IPR019787 -
Arst9g01251 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1099 1188 IPR013083 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 829 856 - -
Arst9g01251 1189 CDD BRCT_TopBP1_rpt7 867 942 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 640 671 - -
Arst9g01251 1189 SUPERFAMILY FYVE/PHD zinc finger 1101 1172 IPR011011 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 604 623 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 550 747 - -
Arst9g01251 1189 Pfam BRCA1 C Terminus (BRCT) domain 877 938 IPR001357 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 447 461 - -
Arst9g01251 1189 ProSiteProfiles Zinc finger PHD-type profile. 1112 1168 IPR019787 -
Arst9g01251 1189 SUPERFAMILY BRCT domain 7 90 IPR036420 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 781 860 - -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 555 572 - -
Arst9g01251 1189 Gene3D BRCT domain 979 1082 IPR036420 -
Arst9g01251 1189 MobiDBLite consensus disorder prediction 678 740 - -
Arst9g01251 1189 SUPERFAMILY BRCT domain 879 956 IPR036420 -
Arst9g01251 1189 Gene3D BRCT domain 862 978 IPR036420 -
Arst9g01251 1189 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Arst9g01251 1189 Pfam twin BRCT domain 111 175 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01251 Arst-Chr9 15863030 15872808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01251 129 235 Core DNA Replication Machinery Family AT4G02110 63.551 1.33e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst9g01251 BRCT 2.2e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01251 K10728 - qsa:O6P43_007236 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01251 9 15863030 15872808 Arst9g01251 9 15863030 15872808 ECH