Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01241 CTACGCCGTCTCTCTCGTTTCTCAGCAACGCCATCTTCCTCCGCCACGCCAATCTTCACCTCCAGCCGCCGAATCTCGCCGGAAGTCCCTCAAACCTCTTCCACTTCCTACTCTTACATCATCGACTCCCTACCGCTTTTCACCTTCTCCTCCGTCACTCGCCGCTCCTCCGCCGCCGACTGCGCCGTTTGCCTCTCGAAGTTCCGTAACGACGATCTCCTCCGCCTCCTACCTATCTGCTGCCACGCCTTCCACGCCGAATGCATTGACACCTGGCTTCAGTCCAACCTCTCCTGTCCGCTCTGCCGATCCGCCATTGTCGCCACCGAATCGGACCTCGGCAAGGTCCTCCGCTCGTCTTCCTCCACCGCCGGCAGTGACAGTTTCCGCCTCGAGATAGGGAACGTGAGCCGCCGCGGCACCGCGCCCGATGGCTCCGCCGCAGTTTCTGGCGAATCCCGCGCCGGAGGCGCAAGGTCTAGGTCATACTCCATTGGATCGTTCGAGTATTTCGTGGACGAAGATTCGGAAGTTCCATTCAGCCACGCTCATCGAAGAAGCACGTCCGATCAGAAGGACATTCCGGCGTCGGCGGAGGCTCCGGCGAGTCAGCATGAAGCGAACCTCGCCGGCGATGTTGGCGGCGTAAGGAGCTGGCTGAAGGAGTACATGGATAGAGTCTCAGCTTCTATATCGACACGAACGGCGTCGTTTCGAAGTTCTGGAAGGTTCTTCAGCGGTACTGGTGGGAGTAGTCGCCGAAGCGACGTCGTTCCAGTCGTAGCTGCAGAATATGACATTGAAGGTAACAGAATTGGTGAAGAGATCACCGAAATGTTTCGCTGGCTCTCAGGGGTATGA 861 0.5854 LRRLSRFSATPSSSATPIFTSSRRISPEVPQTSSTSYSYIIDSLPLFTFSSVTRRSSAADCAVCLSKFRNDDLLRLLPICCHAFHAECIDTWLQSNLSCPLCRSAIVATESDLGKVLRSSSSTAGSDSFRLEIGNVSRRGTAPDGSAAVSGESRAGGARSRSYSIGSFEYFVDEDSEVPFSHAHRRSTSDQKDIPASAEAPASQHEANLAGDVGGVRSWLKEYMDRVSASISTRTASFRSSGRFFSGTGGSSRRSDVVPVVAAEYDIEGNRIGEEITEMFRWLSGV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01241 286 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Arst9g01241 286 SMART ring_2 61 102 IPR001841 -
Arst9g01241 286 SUPERFAMILY RING/U-box 38 108 - -
Arst9g01241 286 MobiDBLite consensus disorder prediction 181 208 - -
Arst9g01241 286 CDD RING-H2_EL5-like 60 103 - -
Arst9g01241 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 33 183 - -
Arst9g01241 286 Pfam Ring finger domain 60 103 IPR001841 -
Arst9g01241 286 FunFam E3 ubiquitin-protein ligase ATL6 29 109 - -
Arst9g01241 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01241 Arst-Chr9 15699633 15700768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01241 40 196 C3H Transcription Factor Family AT2G18650 30.233 2.14e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01241 K10663 - gmx:100817751 372.474