Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01180 ATGGGTTCTCTGGGAGATCCAAGAAGTTGGATTTCATATATGAACAGCAAAGATTGTTCATTAGAGTGGTGTCACAAACATAAATTGTATCCTCCACCGTCAACAGCACCACCTAATTCAAGGCCAAAATTTTCCCCTCTTATAATTGCCATGGCGGGGATCTTGGCCACCGCTTTTATTCTTGCAAGTTACTACTATAGCCGCCGCAGAGAGAACTCCAACGATGACGATGACGATTCAGTCCATGAAGCCGAAACTTGGTGGCATCAATACTACGTCTCAACAAGCACCACAACCAGAATTGGCGGCGACTTAGATGAGGATGCGTTAAAGTGGATGGCAGTGTGGAAGTACAAGAGTGGTAAAAGCAGAGCCGATAGCTGTTGTGTTTGTTTGAATGAATTTGAAGAGGGAGACAGTGTTAGGGCTTTGCCGAACTGCACCCATGCTTTTCATCCTCTTTGCATTCAGACATGGCTCAAATCTCACTCCACCTGCCCTCTTTGTCGTCGTGCCACTGCCCCCTAG 528 0.4659 MGSLGDPRSWISYMNSKDCSLEWCHKHKLYPPPSTAPPNSRPKFSPLIIAMAGILATAFILASYYYSRRRENSNDDDDDSVHEAETWWHQYYVSTSTTTRIGGDLDEDALKWMAVWKYKSGKSRADSCCVCLNEFEEGDSVRALPNCTHAFHPLCIQTWLKSHSTCPLCRRATAP 175
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01180 175 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Arst9g01180 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 174 IPR013083 -
Arst9g01180 175 Pfam Ring finger domain 126 170 IPR001841 -
Arst9g01180 175 SUPERFAMILY RING/U-box 127 172 - -
Arst9g01180 175 CDD RING-H2_EL5-like 127 170 - -
Arst9g01180 175 PANTHER RING-H2 FINGER PROTEIN ATL16 30 172 IPR044600 GO:0016567|GO:0016740
Arst9g01180 175 SMART ring_2 128 169 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Arst9g01180 Arst-Chr9 13623231 13624212 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01180 1 170 C3H Transcription Factor Family AT3G03550 38.916 3.30e-32 116
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01180 - - adu:107464811 369.777