Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01144 ATGGACTCGCGAGCTCAGTATAATCCGCGCACCGTGGAAGAGGTTTTTAGGGATTTCAAGGGTCGCCGAGCAGGTCTCATCAAAGCCCTCACCACCGATGTTGAAGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTATGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCCGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTGGTCGCTGTTCACAGCGATGCGTGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGATAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCCACAATATTTGAAGTTGTTACTGGTGCAGCCAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGTGGCAGCAAATCAAAGTCCAACTCTAAAGCACAGCGTGCTCCGGAACCACAAGGTAGGCAGCAAAAGGCATTGCAAGCAAAAGATGAGGACGATGAACTGGACGAGCAAGAAGATGATGAACACGGGGAAACCTTGTGTGGGGCATGTGGCGAGCATTATGGCACCGATGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGTAATAAGCGAACTCGCCCCTGA 765 0.4771 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKAQRAPEPQGRQQKALQAKDEDDELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01144 254 SMART PHD_3 200 248 IPR001965 -
Arst9g01144 254 Coils Coil 174 194 - -
Arst9g01144 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Arst9g01144 254 FunFam PHD finger alfin-like protein 193 249 - -
Arst9g01144 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Arst9g01144 254 MobiDBLite consensus disorder prediction 150 170 - -
Arst9g01144 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Arst9g01144 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Arst9g01144 254 CDD PHD_AL_plant 200 250 IPR044104 -
Arst9g01144 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Arst9g01144 254 Pfam PHD-finger 201 250 IPR019787 -
Arst9g01144 254 MobiDBLite consensus disorder prediction 145 192 - -
Arst9g01144 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01144 Arst-Chr9 12965797 12970459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01144 5 253 Alfin-like Transcription Factor Family AT3G42790 75.100 1.31e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Arst9g01144 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01144 K26274 - gmx:100170700 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01144 9 12965797 12970459 Arst8g01487 8 24037519 24040490 ECH
Arst9g01144 9 12965797 12970459 Arst9g01144 9 12965797 12970459 ECH
Arst8g01487 8 24037519 24040490 Arst9g01144 9 12965797 12970459 PCT