Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00988 ATGGCGAACAAACATTCACCTTTGGAGCCACACGAACTCAGCAGCGACCAGGGTTCCTACTGTGACGATTTCGAAGGAGATCCCTTTTATGAAGAAACGGAGAGCAAGTTCTCATACCTCTCACTCTCACCTTCCACGAACAAGGCACAAGCAAGAGTTGTTGATGGTACAAATCCAGAAGAGATAGAGATAACAACACCTGCTTCTAACGAAGTAAATTTTGAGAGGGTTGAAAGGTTAATCAAAGGGGGAATGCTAGAGAGATTGAAAGTTGACGAATGCAAGTTGTATTTGCGAAAGAATTGTCTTAGGCTATCTGGAAATAAGGATGTACTCGTCCAGCGTATTAAGGAGCATCTGCAGATCATAAATGGTGGAGGCGAAAGAAAGTACCCACGCTCTAGCTTTGTGTTGGACTGTAAAGGTGATGCATGCACTGGGGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCTAGAAGTGCCAGCGGTCCATCATGTGGTAAAAGGACTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGCACTGCCAAGCAGCAGCATACTTTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTTTTCCTCCGCTTCATCCCCTATTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGGAAAGGCAGAAAATATTGACGGAGAAACACTCGAGGGGATCTATTGCTCGGGCAGATAGAGAAGCAAGGGTACAAGAAAAAGTGAACAGACAAGCAATTGTGGAAAACAGGGTCTCCAGAAAGCATTCAGTAATACATCATCCTCATGCCATTAATCAAGAAAAACCAGCATTCCCATCTAAGAGTTCAGCTGTATCTGCCATTAATCAAGAAAAACCACCATTCCCATCAGCAGTGACCGAACAGTGGAGTAAGTCTGCTAGTTCTAGACGATCGAATGAATCGACATCATTTGGTGTTAACCATGTAAATAACCAGCAAGATTGGAAGCACTCATCTGACCCAATCATTAAAGCTCAACTTGGTGACCTCCACTCCAAAGAAAAAGGGCAATACCAATACCATCCTAGTGAGAGAAACAGGTTTGCACACAGAAATCCTTTGACTAGTGCTAATCACCTTCTTCCGTTGCTGAACAACAGAGAAATCCACAAGCAAAAGCAGCTATGTAGATATTATGCTGGTGGGGGGTGCTATTTTGGGGACAATTGCAAATTTGTACATGATTTGATACTATCAAATCAAGAACAAAGTCTTATCCAGTAG 1311 0.4264 MANKHSPLEPHELSSDQGSYCDDFEGDPFYEETESKFSYLSLSPSTNKAQARVVDGTNPEEIEITTPASNEVNFERVERLIKGGMLERLKVDECKLYLRKNCLRLSGNKDVLVQRIKEHLQIINGGGERKYPRSSFVLDCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRTVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPFPPLHPLLIKGRNLYRLKTLRQKWEDEGERQKILTEKHSRGSIARADREARVQEKVNRQAIVENRVSRKHSVIHHPHAINQEKPAFPSKSSAVSAINQEKPPFPSAVTEQWSKSASSRRSNESTSFGVNHVNNQQDWKHSSDPIIKAQLGDLHSKEKGQYQYHPSERNRFAHRNPLTSANHLLPLLNNREIHKQKQLCRYYAGGGCYFGDNCKFVHDLILSNQEQSLIQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00988 436 ProSiteProfiles Zinc finger C3H1-type profile. 400 426 IPR000571 GO:0046872
Arst9g00988 436 SMART c3hfinal6 400 425 IPR000571 GO:0046872
Arst9g00988 436 MobiDBLite consensus disorder prediction 1 26 - -
Arst9g00988 436 Pfam CCCH-type zinc finger 404 424 IPR041367 -
Arst9g00988 436 PANTHER SAP DOMAIN-CONTAINING PROTEIN 38 375 - -
Arst9g00988 436 MobiDBLite consensus disorder prediction 283 348 - -
Arst9g00988 436 SUPERFAMILY SAP domain 75 121 IPR036361 -
Arst9g00988 436 Gene3D - 355 433 - -
Arst9g00988 436 Pfam SAP domain 86 120 IPR003034 -
Arst9g00988 436 MobiDBLite consensus disorder prediction 291 348 - -
Arst9g00988 436 SUPERFAMILY CCCH zinc finger 399 424 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00988 Arst-Chr9 10491497 10495163 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst9g00988 SAP 7.5e-07 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00988 - - adu:107464672 883.634