Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00881 ATGGGTTCTGTTTGTTGTTGTTTGAGTGTTAATGATTTTGAAGATGATATGAATCCAAATAGTCCTGTATACCGGAACGGTGGGTGCATCAGTTCCGTCTTACAGAACTTTTTGAATGCGTATGCATCAATATTCCGTAGAGGGGAAATGCAGGCAATTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCCACAGCATCACTTGATAATTCTCTATATGACATGTACCGCTCTCCTCCAAGGCCAATGCCTTATGATGCAGACCCAAGGCATTTCCGCTCTCAGCATGATAGACTAGTTTCACGACGTGAGAGGGGTTCAAGTCATGTGAATGATGAGGCAGAACCTCTAAGAAGTGATCTAGATGAGGATGACCAACAATCTTTAACTTCAAGCAACGAGTGGCATGAACATGCCAGTGAAGATGGATCCAAAGAAAACCATTCTAAGTCTTTATTAAGGCTTTCATCAGCAGAACCTACCACTGGAGTTGGACTTGTCTATTCGTCCTCAGAAGAGGAGGATTGCTGTCCAACTTGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTTGATGAAACGATGTAA 687 0.4236 MGSVCCCLSVNDFEDDMNPNSPVYRNGGCISSVLQNFLNAYASIFRRGEMQAIPSSIQGAASMTSTASLDNSLYDMYRSPPRPMPYDADPRHFRSQHDRLVSRRERGSSHVNDEAEPLRSDLDEDDQQSLTSSNEWHEHASEDGSKENHSKSLLRLSSAEPTTGVGLVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00881 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 225 IPR013083 -
Arst9g00881 228 FunFam E3 ubiquitin-protein ligase At3g02290-like 155 225 - -
Arst9g00881 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 226 - -
Arst9g00881 228 SUPERFAMILY RING/U-box 173 224 - -
Arst9g00881 228 MobiDBLite consensus disorder prediction 98 157 - -
Arst9g00881 228 CDD RING-H2_AIRP1-like 174 222 - -
Arst9g00881 228 SMART ring_2 178 218 IPR001841 -
Arst9g00881 228 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
Arst9g00881 228 MobiDBLite consensus disorder prediction 98 150 - -
Arst9g00881 228 Pfam RING-H2 zinc finger domain 173 218 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00881 Arst-Chr9 8802415 8803658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00881 1 226 C3H Transcription Factor Family AT5G38895 50.885 1.30e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00881 - - ahf:112797939 436.802