Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00788 ATGCCTCCGAGAACGGTGAAGCGTGGCGGCACTCCGGGAAGAAGGGGTGGAAGAGGAGGCCGGGGGCCCTCGAAGGCCGCGCAGAATCAGCAGCAGCAGCAGCCGAACCCTGAAGCTGTGGAGGAAGCGGGGAAGCTCGAGGAGAATCCGATTATGGAGGATGAGCCAAAAGCCGAAGTGAACCCTGTTCTTGAAGAGAAACCTGTCGTTGTTGAAGAGGAGAAGCCCTTTGTTGAGGAACAAGCGATTGATATGAATCAAATGGCCCCTGAAGCTGTAGAAGAAGCAGCGACAACACACGTGCATAATGGATCAGCTGTGGCGAAAAACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCCGAATATGAACCGGAGGAATATATTGCAGTTGATTATGATGAGAAGGAAATTGAACAAGACGAGGTTCATCAGGTGGTTGATGAAGTAGAGGAAGAAACGGAGGATAATGCCGGTGAAGAAGAGGGTGACACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAAGATGAGGAGCATGCTGGAGACGAGCATGAGCATGCTGATTTGGTTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGAAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTGTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAAAATAAGGGATTTGCGTGTTAGAGTGGATTTAAATCTGTTATTGTATGGAATCATATGTTTTAATCACTGCAATTTCAGATTAATGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAAAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACACTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGACTTCAAAAGAGAGATGTTGTGTTTGGAGTAGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAAACTGTTTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTTCGGGATCTTCTTAAGAAATTTGGGGACCTAGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCCCGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTGCTGAAAGTATTAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGCCCTGGTCGTGGTTCTGCAACAATGGCCAGGCCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCCCCTCGCACGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCAGTGCCAGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTCCTCCTCCTACATATCCTAAAGTTAGTACGAAGAGAGATTATGTTCGACGTGAGGACATACCGCCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGTCCATCATACAGGGATTATCCAGCCCGTGGTCCTGCATATTCTGATATTCCAAGAAGTACGGCTCGTGCTGCACCAAGGAGAGGTTACGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCTTCCCCCTCCGCCACCCTCTGCACACATGAGTTACCGTGAAGGACGACCCCGCGACTATGATGCCCTCTCTGGCTCAAAACGTTCTTATGCTTCCATTGATGATGTTCCTTCACGATATGCGGATACTAGTGCTCGTCAATCAAGAGCTCGTTTGGACTATGAATATGGTGGTAGTGGTTCTCAATATGGAGATGCTTATGGTGACAGGCTGGGAAGATCTAGTCTGGGGTATGGTGGAAGCAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTCGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTAATAGTGATGTTGGTGGGATGTACTCATCAAGTTATGGTGGTGATTACATTTCACGAGGAAGTGATGTTGGAGGCAGCTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTGGAGGTGGCTCCGGCTCTTATTATTAG 2451 0.4631 MPPRTVKRGGTPGRRGGRGGRGPSKAAQNQQQQQPNPEAVEEAGKLEENPIMEDEPKAEVNPVLEEKPVVVEEEKPFVEEQAIDMNQMAPEAVEEAATTHVHNGSAVAKNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIAVDYDEKEIEQDEVHQVVDEVEEETEDNAGEEEGDTGEEEVEDVHDEIEGEEDEEHAGDEHEHADLVDVEEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFACXSGFKSVIVWNHMFXSLQFQINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDLEKIELARNMPAARRKDYGFVTFATHEAAVRCAESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGSATMARPSWSRPAPRSFPPPRTVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPPPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYSDIPRSTARAAPRRGYVDDGYGQRFERLPPPPPSAHMSYREGRPRDYDALSGSKRSYASIDDVPSRYADTSARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGNSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGSSSYMGGGGGSGSYY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00788 816 CDD RRM_SF 312 379 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 492 543 - -
Arst9g00788 816 FunFam Heterogeneous nuclear ribonucleoprotein Q 310 393 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 106 123 - -
Arst9g00788 816 Coils Coil 105 128 - -
Arst9g00788 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 489 IPR000504 GO:0003723
Arst9g00788 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 394 IPR000504 GO:0003723
Arst9g00788 816 SUPERFAMILY RNA-binding domain, RBD 226 274 IPR035979 GO:0003676
Arst9g00788 816 MobiDBLite consensus disorder prediction 730 749 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 706 754 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 555 682 - -
Arst9g00788 816 Gene3D - 145 276 IPR012677 -
Arst9g00788 816 SUPERFAMILY RNA-binding domain, RBD 308 474 IPR035979 GO:0003676
Arst9g00788 816 MobiDBLite consensus disorder prediction 124 150 - -
Arst9g00788 816 FunFam RNA recognition water-stress protein1 397 518 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 24 38 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 158 199 - -
Arst9g00788 816 SMART rrm1_1 408 483 IPR000504 GO:0003723
Arst9g00788 816 SMART rrm1_1 231 304 IPR000504 GO:0003723
Arst9g00788 816 SMART rrm1_1 311 390 IPR000504 GO:0003723
Arst9g00788 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 274 IPR000504 GO:0003723
Arst9g00788 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 274 IPR000504 GO:0003723
Arst9g00788 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 378 IPR000504 GO:0003723
Arst9g00788 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 474 IPR000504 GO:0003723
Arst9g00788 816 Gene3D - 397 514 IPR012677 -
Arst9g00788 816 MobiDBLite consensus disorder prediction 583 597 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 200 218 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 1 218 - -
Arst9g00788 816 Coils Coil 147 167 - -
Arst9g00788 816 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 66 807 - -
Arst9g00788 816 Gene3D - 310 393 IPR012677 -
Arst9g00788 816 MobiDBLite consensus disorder prediction 557 580 - -
Arst9g00788 816 MobiDBLite consensus disorder prediction 41 80 - -
Arst9g00788 816 CDD RRM_SF 409 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00788 Arst-Chr9 7530107 7534804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00788 232 474 Eukaryotic Initiation Factors Gene Family AT3G16380 25.097 1.90e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00788 - - aprc:113850151 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g00788 9 7530107 7534804 Arst9g00788 9 7530107 7534804 ECH
Arst9g00788 9 7530107 7534804 Arst4g03518 4 113565110 113570177 PCT