Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00549 ATGGTGGCATCATCAGACAATACTAGTAGCCACGGTAGAGATTGTGGAAAGCTTCTTGCCCCATCATCAAAGTCATGTAAGCTACTAAAAAAATATCCGCAAAATAAGAGACGGTTACAGTGTAAGTTTTGCAACAAGAAATTCTCCAATAGCCAAGCTTTGGGAGGGCATCAGAATGCACACAAATTGGAGAGAGCCGCGGTGAAGAGAGACAACATTCTCGCCATGGCGTCTGCTTATATCAACTACTTACCACCATCTCAGTCTAATATGCAAAATTATTATTCAAATTTTTCTGCTTTTAGTCATAGTAGTAGAACGGGGATGCAACAACCACCACAAGCAATGATTCATAATAGGTCTTCAATTGCACTTGGGCCTGGGTACCTTCATAATGTATTGTTGGAAAATCAAATCATGAATCCTCAACGTAGCAGGCATCATTCGCCGCCGGGACCGGCGTTGCCGCCGCAGGACAGAGAAGTATTGCCGCAAAAAGAATTATTGACAATGAATTTGTTACCACAACAGTCACGGTTGAGTTTAGGTGAAAACATGAATCCAAACCAAACAAATAAACAACAACAACAACCAGGTAATGTTGTAGCATTGCATGAATTACAATTATATAGCTTTTAA 639 0.4053 MVASSDNTSSHGRDCGKLLAPSSKSCKLLKKYPQNKRRLQCKFCNKKFSNSQALGGHQNAHKLERAAVKRDNILAMASAYINYLPPSQSNMQNYYSNFSAFSHSSRTGMQQPPQAMIHNRSSIALGPGYLHNVLLENQIMNPQRSRHHSPPGPALPPQDREVLPQKELLTMNLLPQQSRLSLGENMNPNQTNKQQQQPGNVVALHELQLYSF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00549 212 Gene3D Classic Zinc Finger 21 81 - -
Arst9g00549 212 MobiDBLite consensus disorder prediction 181 200 - -
Arst9g00549 212 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Arst9g00549 212 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 141 IPR044246 GO:0009788
Arst9g00549 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Arst9g00549 212 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00549 Arst-Chr9 4676632 4677270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00549 32 75 C2H2 Transcription Factor Family AT5G14010 55.556 1.99e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst9g00549 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00549 - - ahf:112708745 413.69