Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00536 ATGGCTTCCTCTAGTTTCCAAAGAAACAAGCATTCTCCTTCCTCTGTGATCTGTTTCTTCAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAACCTTAAGTTTCCAAAAGAGTTCAGTATGAAATACGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCGATTCAATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATATGATGTGGTTTGAGTACAATAAAACTTCTAAAACATTGTAG 315 0.3873 MASSSFQRNKHSPSSVICFFKIVLRQSLEDGNLKFPKEFSMKYGDGVPNPVYLKPPDGTAWKIDWSEYDGAIQFENGWKEFASYYSLDHGHMMWFEYNKTSKTL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00536 104 PANTHER B3 DOMAIN-CONTAINING 10 101 - -
Arst9g00536 104 CDD B3_DNA 18 104 IPR003340 GO:0003677
Arst9g00536 104 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Arst9g00536 104 SUPERFAMILY DNA-binding pseudobarrel domain 12 101 IPR015300 -
Arst9g00536 104 ProSiteProfiles B3 DNA-binding domain profile. 18 104 IPR003340 GO:0003677
Arst9g00536 104 Gene3D - 12 104 IPR015300 -
Arst9g00536 104 SMART B3_2 19 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00536 Arst-Chr9 4598425 4599201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00536 19 101 B3 DNA Binding Superfamily AT3G18990 31.325 4.99e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst9g00536 B3 6.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00536 - - adu:110275904 226.868