LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst9g00527	ATGGCAGTTACATTGTATGACCTTGGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTCTATCAAAAGTTCCATCTGATGAACATGTGAATGTGTCCAGGTGGTACAAGCATATCGATGCATTGTTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGAAATCTTCTCTCGTCGCTGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCTGCTGTGGCTGATGATGACGATGATGATGATGTGGATCTCTTTGGACTGAATTTCATTTCGATCTGCCCTCCATTCTAGTTTTCTGGAAAATCATCTGTTTTGATGGATATCAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGGTATGGTATCAAGAAACTGCAAATTATGCTTACTATTGTGGATGATTTGGTCTCTGTCGATTCGCTCATTGAGGAGCAACTTACAGCTGAGCCGATCAACGAATATGTCCAGAGTTGTGACATTGTTGCTTTCAACAAAATATAA	654	0.4388	MAVTLYDLGSASGLKKLDEYLLTRSYITGYQASKDDLTVYAALSKVPSDEHVNVSRWYKHIDALLRISGVSGEGSGVTVKSSLVAEAVATPPPADSKAAVADDDDDDDVDLFGLNFISICPPFXFSGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTAEPINEYVQSCDIVAFNKI	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst9g00527	217	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	206	217	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Arst9g00527	217	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	10	113	-	-
	Arst9g00527	217	CDD	EF1B	126	217	IPR014038	GO:0003746\|GO:0006414
	Arst9g00527	217	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	105	113	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Arst9g00527	217	FunFam	Elongation factor 1-delta 1	3	78	-	-
	Arst9g00527	217	SMART	EF1_GNE_2	128	217	IPR014038	GO:0003746\|GO:0006414
	Arst9g00527	217	FunFam	Elongation factor 1-beta 1 like	124	217	-	-
	Arst9g00527	217	SUPERFAMILY	eEF-1beta-like	126	217	IPR036219	-
	Arst9g00527	217	Gene3D	-	6	81	-	-
	Arst9g00527	217	Gene3D	-	125	217	IPR014717	-
	Arst9g00527	217	Pfam	EF-1 guanine nucleotide exchange domain	130	217	IPR014038	GO:0003746\|GO:0006414
	Arst9g00527	217	SUPERFAMILY	GST C-terminal domain-like	12	67	IPR036282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst9g00527	Arst-Chr9	4458743	4460908	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst9g00527	7	217	Eukaryotic Initiation Factors Gene Family	AT2G18110	72.124	3.06e-105	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst9g00527	K03232		-	gmx:100777627	311.997