Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00489 ATGGCTGCGACACGCATAGCTTCCTCCTTATTTTCTTCTTCAATCAACACTACTGTCAAAAATTGCTTCGCTTCAAAAACCATAATAGACCCTCCTCTCATAGCAATATCCTCCAATCGCAAGTTATCATCACTGACCCAGTGCTATTATTTTGTGGAACCTTTGTCATTAATTGGTGTTACTAAGTTATGGACGCCTAAAACTTCAGCAGCTGTTGTTGTTTCACAAGAAGAAATTGCTTTGTCTGATGATGCGGGCTTAGTTGAAGAGGAAAAAGAAAGGCAAGTATTGGAAGAACAGCAACAAGATGATTCTACTGAGTCCTCTATCAACACTAAGCTTTACTTTGGAAATTTGCCGTACAGTGTTGACTTAAATCTTTTGTTTGATGTGATGCATTCCAGAAATTCCATAATGTTAATAATCTTATATATATATTTACAGGTTCTCTATGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGCAATGCAGTAATACAAAATCTTGACGGAAAAGAATTCTTGGGCCGAACTTTACGGGTAAACTTCGCTGACAAGCCAAAACCAAAAGAACCATTGTACCCTGAAACTGAGCATAAGCTATTTGTTGGAAATCTGTCATGGTCAGTAACTTCTGAGAGCCTTACAGAAGCGTTTCAAGAATATGGAACTGTGGTTGGAGCTAGGGTCTTGTATGATGGCGAAACAGGAAGGTCACGCGGCTATGGCTTCGTTTGCTATTCGACAAAGGCAGAAATGGAAGCTGCCCTTACATCTCTGAATGATGTGGAACTAGAGGGACGGGCAATGCGTGTAAGTGTGGCGCAAGGTAAGCGTTCGCAAGGTTAA 879 0.4073 MAATRIASSLFSSSINTTVKNCFASKTIIDPPLIAISSNRKLSSLTQCYYFVEPLSLIGVTKLWTPKTSAAVVVSQEEIALSDDAGLVEEEKERQVLEEQQQDDSTESSINTKLYFGNLPYSVDLNLLFDVMHSRNSIMLIILYIYLQVLYDRDTGKSRGFAFVTMSCIEDCNAVIQNLDGKEFLGRTLRVNFADKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALTSLNDVELEGRAMRVSVAQGKRSQG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00489 292 Coils Coil 87 107 - -
Arst9g00489 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 190 IPR000504 GO:0003723
Arst9g00489 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 280 IPR000504 GO:0003723
Arst9g00489 292 FunFam 28 kDa ribonucleoprotein, chloroplastic 200 291 - -
Arst9g00489 292 Gene3D - 80 199 IPR012677 -
Arst9g00489 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Arst9g00489 292 SMART rrm1_1 113 192 IPR000504 GO:0003723
Arst9g00489 292 SMART rrm1_1 210 283 IPR000504 GO:0003723
Arst9g00489 292 SUPERFAMILY RNA-binding domain, RBD 111 289 IPR035979 GO:0003676
Arst9g00489 292 CDD RRM2_NsCP33_like 210 285 - -
Arst9g00489 292 Gene3D - 200 292 IPR012677 -
Arst9g00489 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 196 IPR000504 GO:0003723
Arst9g00489 292 PANTHER OS02G0815200 PROTEIN 75 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00489 Arst-Chr9 4155754 4158000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00489 112 288 Eukaryotic Initiation Factors Gene Family AT2G36660 29.474 8.07e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00489 - - adu:107464158 558.525