Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00476 ATGTACTCTGAAAATCTGATGGTGTCCGCTGAAAACCCTAGACCCTTCGCGTTTCAGCAACATCTGTCTTCTTCTTCGTCTACTACTACTTCGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGATGCCTCCCCCTTCCACTCTCGGTTGCAGGTTCGAGGCTATGCTCAAGCTGCGCGACGACGAGCTCAGGGCCACTGCCGGTCACGTGCCCCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTCCAATCAGAAGCTCATTATCAACGATCTCACCTTCATCGCTGTGCACCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATAGTGAAGAACTTTGGACAGGAATATGTTACATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAGAAGTCTTTCCACCGTCTGCCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTAGTTAATAATAGTCAATCGTCCAACATGAATCCCCTCAGAGCATCTGAATCTCCTAGTCCAAGTCATGGCATACATGTAAATCCAAAGTACCTGCAGCAGTTGGAGCGCTCTACTGTAGATAGTACAAGTGGGAAAGAATGGTGTGGCTTATTCGTCGGGGATGATTGTGTGCAAGAGGAGCTGCTTGAAAAAGCTGTTCCAGGAGATGATGATGGTGAAAGGAAAATGAACTTTGCATGGCGGGTGGACAAGATGGAAGCAGACATTAGAAATCTGAAATTCATGACTCAAGTTCTTGGGTTTGGGTTGTTGGTAGTTGTAGTTTTTGTAGGAATGGTGCTCTTAAAGAGTTGA 969 0.4892 MYSENLMVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQMPPPSTLGCRFEAMLKLRDDELRATAGHVPPPSTEEIVQLYEMLLSELTSNQKLIINDLTFIAVHQREHARGIADAICARILKVPAEQKLPSLYLLDSIVKNFGQEYVTYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSEVFPPSALRKIEAELQLSQVVNNSQSSNMNPLRASESPSPSHGIHVNPKYLQQLERSTVDSTSGKEWCGLFVGDDCVQEELLEKAVPGDDDGERKMNFAWRVDKMEADIRNLKFMTQVLGFGLLVVVVFVGMVLLKS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00476 322 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 57 243 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Arst9g00476 322 Gene3D - 74 202 IPR008942 -
Arst9g00476 322 SUPERFAMILY ENTH/VHS domain 75 200 IPR008942 -
Arst9g00476 322 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Arst9g00476 322 Pfam CID domain 86 194 IPR006569 -
Arst9g00476 322 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Arst9g00476 322 CDD CID_Pcf11 81 200 IPR047415 -
Arst9g00476 322 SMART 558neu5 79 201 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00476 Arst-Chr9 3924004 3926573 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00476 28 247 C2H2 Transcription Factor Family AT4G04885 58.371 8.51e-73 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00476 K14400 - gmx:100787354 332.413