LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst9g00470	ATGGCAACTTCTCTTTTTCTACTGCTTGGAGCTCTTTCTTTCATAGCAACGATCCAAGGCCAGGATCAATCAGGATTTATTAGCATAGATTGTGGACTACCTGAAAATTACAGCTACGTTGAGAAGAATACTGGAATCAATTACATTTCAGATGCTAATTTCATTGATTCTGGTGTGAGTAAGACTGTGTCGCCTCAAGATAAGGCTACTCATCAACAATATTTTACTTACCTTCGAAGCTTTCCTTATGGAACAAGAAACTGTTACAGAATAAATAATGTAACCATCAACACTGCATATATTATTAGAACTAGTTTCTTGTATGGAAACTATGACGGTCTAAATAAGCTCCCACAGTTTGAAGTTCATGTTGGAACTAATTTGTGGGACACATTGAAATTCTCGGATGCATCAGTGAGCATATACAGAGAGCTCTCTCACTCTCCAACAAGGGATTATGTAGATATCTGTCTGGTTAACATAGGCACTGGCACACCATTCATTTCGGCTATAGAATTGAGGATTCTTGGGAAGGATAATGGTCCCAGCTCTTACTCAGTTGCACGTCTCAAAGGATTAGACTTGGGCAGCAAGAACAATTCAACATGCAGGTACAGAGATGACATATATGGCTGCATATGGGAGCCTTATTCCGTGAATGGGTGGAGACAGTTAATCAGCACAAATATTGATCCTAATCCAAGTCAGAAAATGACATATGTTCCACCAGCAAGTGTGATGAGAACAGCCGCTACACCAAGAAATGCAAGAGATTCTTTGGATTTCTCCTTTCAGTTTGATTATGTTGCACAGATACATGTCAGATTCTATTTTGCTGAGGTACAAAAGCTGTCAGCAAATGAAAGTAGATCATTCAACATCAGCGTCAATGGCAATTATTGGGAAGGACCCATTGTACCCACATACAATCAAACAGATTTCTACATTTTTTACAGTACATATTTTGAAAGAATTAGTGAATATCGATTCTCACTTCTTCCTACAGAGTTCTCTACCCTTCCTCCTATCACCAACGCTATTGAGATTTTTCTTGTTAAGGATTTCTCACAGCCACAAACTCAAAATGATCAAGCTGATGCTATGAGAAATATCAAGATTGCTTATAAGGTGTCAAAAAATTGGCAAGGAGATCCATGTGCCCCTGTAGCATACAAGTGGGACGGTCTAAATTGTAGTTCCGTTGGTACTTTAAAAATCACAGCCTTGAATTTGTCTTCCAGTGGACTAACGGGACAAATTGTATCTTATATCTCCAAGCTTACTGACTTAGAGTCCTTGGATTTATCAAATAATAGCTTAAACGGGGAGATACCTGATTTTCTGGCAGACCTGCAATCACTTAAAGTCCTAAACTTGCATAATAACAACCTCACAGGTCAAGTTCCGAATGCACTCATCCAAAGATCAAGTGAAGGAGTACTATCACTAAGGTTGGGGCAAAACCCAAATCTGCTATGTGAATCTGCTCTTTGTGACCAACAGACAAAGGATAAAAGCAAGAAAAATAACACAGTTATTTATGTACTAGCATCTATTTCTGCAATTTTAGTGCTTTTGCTGTTAGTTCTTGCAATGATTAACATCATTTACATCAAAAAGAGAAAGCCAAAAGATTATTTCAAAGTTCATAAGGAGTTTAGTGATCAAACTGGATCACAGTTGGAATCTAAGAGAAGACGGTATTCATTCAATGAAGTATCTAACATGACCAATAATTTCGAAAGAGTCATCGGTAGAGGTGGATTTGGAACAGTTTACTATGGCATTATTGATAACATTCAAGTAGCTGTCAAGATGCTTTCGCAATCATCAGTACAAGGATATCAGCAATTTCTAGCAGAGGTTAACATTTTGATGAGGGTTCATCATAGGAATCTAACTTCCCTCATTGGATACTGCAACGAAGAAACCAACATAGCACTCATCTATGAATATATGGAAAATGGCAACTTAGAAGAACATCTTTTGGAGAAAAATAGCAGGACAAGGTTGTTCAATTGGGAAGAAAGGCTCACTATAGCTATGGATGCAGCCCAAGGACTTGAATATCTACATAACGGTTGTAAGCCACCAATAATCCACAGAGATGTGAAATGTACAAACATTTTACTAAATGAAAATTTCCAAGCGAAAATGTCAGACTTAGGTCTGTCCAGAAGCTTTCCGGTTGACGGCGGCACACATGTAACAACTGTCATTGCGGGGACTCCTGGTTACTTGGATCCAGAGTACCAAGTATCAAATAGGCTAACAGAGAAAAGTGATGTTTATAGTTTTGGGGTAGTTTTATTGGAGATAATCACAGGTAAACCAGCAATAGCTAAAGCGGTTGAGGGGAAAATTCACATAAGTGAGTGGGTTAAATCTATGCTTGCAAAAGGTGATGTAAAATGTATTGTTGATACAAGATTACAAGGAGATTTTGAGAGTAGTTCTGTTTGGAGAGCTGTTGAAATAGCAATGGCTTCTGTGTCCAATAAGTCCTCCAAAAGACCATACATGACTGATATTGTGACCGAGCTAAAGGAATGTTTGGCTATGGAGTTGGCTCGAAAACATAACAGTTGCGAAACCATGACTATGAGTTTGGCTACAGAGTCAGAAAGCAGCTCCTTGGCTAGTTCCATAATGATGTTTAAAACAGAAATGGCTGGATCTTAA	2682	0.3837	MATSLFLLLGALSFIATIQGQDQSGFISIDCGLPENYSYVEKNTGINYISDANFIDSGVSKTVSPQDKATHQQYFTYLRSFPYGTRNCYRINNVTINTAYIIRTSFLYGNYDGLNKLPQFEVHVGTNLWDTLKFSDASVSIYRELSHSPTRDYVDICLVNIGTGTPFISAIELRILGKDNGPSSYSVARLKGLDLGSKNNSTCRYRDDIYGCIWEPYSVNGWRQLISTNIDPNPSQKMTYVPPASVMRTAATPRNARDSLDFSFQFDYVAQIHVRFYFAEVQKLSANESRSFNISVNGNYWEGPIVPTYNQTDFYIFYSTYFERISEYRFSLLPTEFSTLPPITNAIEIFLVKDFSQPQTQNDQADAMRNIKIAYKVSKNWQGDPCAPVAYKWDGLNCSSVGTLKITALNLSSSGLTGQIVSYISKLTDLESLDLSNNSLNGEIPDFLADLQSLKVLNLHNNNLTGQVPNALIQRSSEGVLSLRLGQNPNLLCESALCDQQTKDKSKKNNTVIYVLASISAILVLLLLVLAMINIIYIKKRKPKDYFKVHKEFSDQTGSQLESKRRRYSFNEVSNMTNNFERVIGRGGFGTVYYGIIDNIQVAVKMLSQSSVQGYQQFLAEVNILMRVHHRNLTSLIGYCNEETNIALIYEYMENGNLEEHLLEKNSRTRLFNWEERLTIAMDAAQGLEYLHNGCKPPIIHRDVKCTNILLNENFQAKMSDLGLSRSFPVDGGTHVTTVIAGTPGYLDPEYQVSNRLTEKSDVYSFGVVLLEIITGKPAIAKAVEGKIHISEWVKSMLAKGDVKCIVDTRLQGDFESSSVWRAVEIAMASVSNKSSKRPYMTDIVTELKECLAMELARKHNSCETMTMSLATESESSSLASSIMMFKTEMAGS	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst9g00470	893	Gene3D	Phosphorylase Kinase; domain 1	565	652	-	-
	Arst9g00470	893	SMART	serkin_6	578	841	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst9g00470	893	Pfam	Leucine rich repeat	407	464	IPR001611	GO:0005515
	Arst9g00470	893	ProSitePatterns	Protein kinases ATP-binding region signature.	584	605	IPR017441	GO:0005524
	Arst9g00470	893	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	699	711	IPR008271	GO:0004672\|GO:0006468
	Arst9g00470	893	SUPERFAMILY	L domain-like	390	477	-	-
	Arst9g00470	893	ProSiteProfiles	Protein kinase domain profile.	578	871	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst9g00470	893	CDD	STKc_IRAK	584	850	-	-
	Arst9g00470	893	SUPERFAMILY	Protein kinase-like (PK-like)	560	848	IPR011009	-
	Arst9g00470	893	Pfam	Protein tyrosine and serine/threonine kinase	580	847	IPR001245	GO:0004672\|GO:0006468
	Arst9g00470	893	PRINTS	Leucine-rich repeat signature	430	443	-	-
	Arst9g00470	893	PRINTS	Leucine-rich repeat signature	451	464	-	-
	Arst9g00470	893	Gene3D	Ribonuclease Inhibitor	365	480	IPR032675	-
	Arst9g00470	893	FunFam	Leucine-rich repeat receptor-like protein kinase	556	652	-	-
	Arst9g00470	893	Gene3D	Transferase(Phosphotransferase) domain 1	653	875	-	-
	Arst9g00470	893	PANTHER	OS07G0107800 PROTEIN-RELATED	27	857	-	-
	Arst9g00470	893	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	653	861	-	-
	Arst9g00470	893	FunFam	Leucine-rich repeat receptor-like kinase	363	494	-	-
	Arst9g00470	893	Pfam	Malectin-like domain	29	351	IPR024788	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst9g00470	Arst-Chr9	3851484	3857376	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst9g00470	1	880	Receptor kinase-like Gene Family	AT1G51850	44.396	0.0	750

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Arst9g00470		Malectin_like	6.4e-91	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst9g00470	-		-	ahf:112712814	1618.59