Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00420 ATGATGGATGATAGTAGAAGAAGGAGAAGAAGCAGCCACAACAAGTTTTCAGAGGAAAAGGAACTAGAACTAAGACTTGGTCCACCTGGTGAAGAAGAAGAAGAAGATGAAGAAAAAGATGAAGATTATTGGTCTCATCACAATGAAAACAAGAGAGAAAGAAACAGTGATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCATCCCAGAGAATTTACAACTACCACCAGGACCAGGCTACTAAGGCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAATATCATCATCACAACCATGTCGTTCTGAAGTGATAGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTTTTCTAAGCCCCCTCTTGGGTCCCACCACAACCATCATCATCATCTTAATCTTAATGTGGAAGACAAGGCTGCTAATAATACTATTAATAAGGAACATGTTAACAACATTAGTGGTCCTCCTAATAAAGGCATGTTTGTGAAGATCAATATGGATGGAATTCCAATTGGGAGAAAAGTGGATATTAATGCTTATGGCAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAGATTCGTGTGGTGGTGGAAGTATTGAAAAGCAAAATCAAGAGGAAGAGAAAACAATGATAACAACAGGTGTATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTCTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATACACCACTCAAAATGA 1032 0.405 MMDDSRRRRRSSHNKFSEEKELELRLGPPGEEEEEDEEKDEDYWSHHNENKRERNSDESDQSPLSLGYFSSQRIYNYHQDQATKAKASSFLQNMSMVGKESKDAISSSQPCRSEVIEFHNGAVCAEKKALSSPSSANTAAPNSSQKRSAAGPVVGWPPIRSFRKNNASGSTFSKPPLGSHHNHHHHLNLNVEDKAANNTINKEHVNNISGPPNKGMFVKINMDGIPIGRKVDINAYGSYDKLSSVVDHLFRDLLSAQRRDSCGGGSIEKQNQEEEKTMITTGVLDGSGEYTLIYEDNEGDKMLLGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHIHHSK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00420 343 MobiDBLite consensus disorder prediction 130 149 - -
Arst9g00420 343 Gene3D - 211 335 - -
Arst9g00420 343 ProSiteProfiles PB1 domain profile. 215 324 IPR000270 GO:0005515
Arst9g00420 343 MobiDBLite consensus disorder prediction 129 184 - -
Arst9g00420 343 MobiDBLite consensus disorder prediction 1 65 - -
Arst9g00420 343 FunFam Auxin-responsive protein 211 335 - -
Arst9g00420 343 MobiDBLite consensus disorder prediction 1 27 - -
Arst9g00420 343 MobiDBLite consensus disorder prediction 41 59 - -
Arst9g00420 343 Pfam AUX/IAA family 21 330 IPR033389 -
Arst9g00420 343 MobiDBLite consensus disorder prediction 163 177 - -
Arst9g00420 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 328 IPR003311 GO:0005634|GO:0006355
Arst9g00420 343 SUPERFAMILY CAD & PB1 domains 209 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00420 Arst-Chr9 3423079 3429557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00420 219 335 B3 DNA Binding Superfamily AT4G23980 29.915 6.39e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst9g00420 AUX_IAA 8.2e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00420 K14484 - tcc:18596026 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g00420 9 3423079 3429557 Arst7g02242 7 51721111 51722684 ECH
Arst9g00420 9 3423079 3429557 Arst9g00420 9 3423079 3429557 ECH
Arst7g02242 7 51721111 51722684 Arst9g00420 9 3423079 3429557 PCT