Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00311 ATGAAGAAACATAAGTCCTCTGTTCTCAACTTCCGTAAACCAACCGCACAGTCACTTGAAGCTCCAAAGGAGCCTCGACGACCGAAAACTCATTGGGACCATGTATTAGAAGAGATGGTGTGGTTGTCAAAGGACTTTGAATCAGAGAGGAAATGGAAACTTGCTCAGGCCAAGAAAGTTGCTTTGAGAGCCAGCAAAGGCATGTTAGATCAGGCTACCAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAACGCTTACGAAAAGTTGCGCTAAATATTTCTAAGGATGTTAAGAAGTTCTGGACAAAAATAGAAAAGCTGGTTCTTTATAAGCATCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCGTCAATGCTGGCAAAGAATCTTGTGGATCCTTATAAACCGGTTGAGAAAAGTTCTGCTGAGCATCACATGAGTAGTCAATACAAGGATATAGATACAGACATTATTAATGAACCCGAGGAAGCTGATGTTGAGCATCAGTTGGATGCACCTGATGATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAGGATGAGGCCCATATAACCAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGAATGATGAAATTGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGGTGGCAGGAATGATGAATCTGCAAGTCAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGATAAAATAGCTAGAAGTAGTGATGAAAATGGAGATGCTTTATGCGCCAATGAAACTGGTACAGGCGACTCTAGCATGGACCCTGGTCGACACTGTGGAGAAAGTGTTGGTGACGTAGCTACTCCAGTAAACAATGGTGATGTTGCTACTCCAATAAATAATCAATCTGAATATGACGATCATCAATCTGAAAATATTAAGGAGGCTTCTAGTGAGATGGCTAATGAAGATACTACCCGTGGCTTTACTGATGAAGAGGATGATGGTGACTTCTTGCAAACAACAGAGGACAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAGTAGATATCATTGATCCCAATGATGAGATTGCATTATTGCAAAAGGAGAGTGACATGCCTGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGACATGGGGATGAATCTGATTATGCTTCTCCTTTATCTGAGCACCATGAGAACTCTTCAAGCAATGAAGATTCTGGACAGAAGGATGTTGCTGTCCCTATGGAAGAAGATATCAAGTCTGAGAACCTTCCTGCTGTTGAACCTCAGGAAAAAGAATGGGAAGTACCTCATGAAACTTCAGAAAAAGGAGAAGGCGAGTATAATATATCTGACGCAGCTGCTGCAGCAAGATCAGCTCAACCAACTGGAATCACCTTCTCTACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGTGAGTACCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTTGGCTGATGAAATGGGGCTTGGCAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAAGGGAATATGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTCAAAATTTTAACTTACTTTGGGAGTGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTGTGCATAACAACCTATAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGATGGCAGACACTCTTGAATTTCAACTCAAAACGGCGTATTCTCTTGACTGGCACACCACTGCAGAATGATCTCATGGAGCTGTGGTCTCTCATGCATTTTTTGATGCCACATGTCTTCCAATCTCATCAAGAGTTTAAGGATTGGTTTTGCAATCCTATATCTGGGATGGTAGAGGGAGAGGAGAAAGTTAACAAGGAGGTTGTTGATCGCCTGCATAATGTTCTTCGTCCATTCTTACTCCGCAGGTTGAAGCGAGATGTGGAAAAGCAACTTCCATCGAAACATGAGCATGTCATATATTGTAGACTGTCAAAGCGGCAGCGTAATTTATATGAAGACTTCATTGCTAGCTCAGAGACCCAAGCTACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCCTTTGACATGTCGGGTATTGATGTTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTCTCCTAATCCCTTTTCAATAGTAGACCTAAAAGGCTTAGGCCTCCTATTTACTCATCTTGAATATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTTCTAGTTTAATCATGGAACGCACTGATAAGGGTGACCTGGAGGTAATTAAGCCTTGGTCAAAATGTCGAAAAAAGCTACAAGGAACAAACATTTTTGAAGAGATCCGCAAAGCAATTTGGGAAGAGAGGTTGAAAGAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAAACCCATCTACTCCACAAGCCTAAGGAATCTTGTTACTCTAAAGCATCCTGTATATGATATTCATCAAGTTAAGGCAAACCCTGTTTCATATTTGTACTCATCGAAGCTGGCCGACATTGTTCTATCACCAGTTGAACGATTTCAGAGGATGACCGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCAGCACGAGCACCCTCTCCAGTTTGCTGGTGCAGCAGAAGTGGGGCAACTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTCACCATTACTGTCACCAATCAGGCCTGCAGTTGTTCGTAGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGCGGGAAATTGCAAGAACTCGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCATCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGATGTGCTGGAAGCATTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACTCAACCAGAAGAGAGGCAGACCTTAATGCAGCGCTTTAACACTAACCCCAAATATTTTCTTTTTATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACTGTTATTTTTTACGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAGGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATCGAGGAAAATATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTTGACGATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAGCTATTTTCAGGCCATAGAACATTTCAGATTAAAAATATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTAAAGAAAGTTGAGGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATATGAAGGATGATGAGCCTGCCGAGTTTGGTGAATCTGTTTCCAACTTAAGTAAACAGAATGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGTAATGGCCACTGTTTCTTTAAAAGAAGACGATGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTGCGTCCTATTGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAAATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGACCTTGGCTCAACATCAGTTGATGGAGGAACTAGAATATGAAGCTAAACAGAAAGCGGAAGCTGAGGAAGAAAATTCTAAAAAGACTCCTGGTGATTCAAAGCCCAAATCGAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTTTAAACTCTGGCACGAGACCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTGTCAGTAGTCTTGCTCTTGTATCCCCAAATTCAGCTATGCAGAAAAAACGGAAGAAACCTAAATTTACAAGTGATGGTGAGGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAGAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAACTTATTAGTTATGCATGATGAAAATGCAGAGACTCTGGTTGAGAATGAACAGAAAACGTCAAGCAGAAATAAGATGGGAGGGAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAGTGAAAAAGGGAAATCTTTGGTCCAAAGATTGTATCCCACCAGCAGATACTTGGTTACCTCAGGAAGATGCAGTATTATGTGCAGTCGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCCGGTGGGGCATATCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATATGTCTTATACTCGGTGGATGCCACAAATAATGAGAAGACAAACAATACTGGTTCTGGAAAAGCCCTTCTTAAAGTTACAGAGGAGAACATTCGCATGTTGTTAGATGTTGCTTCTGTGCAACCCAATAGGGAATTACTACTGCAGAAGCATTTTTATGCACTGCTTTCTTGTGTCTGGAAGCTTTCATCACATGTTGACCGAAGGCAAAATCCATCAGCTACCTCTAATGGTCTATGTTTTGATAAGAGTTTCTTTGGTTCTGTTGGCCAGCATTCACAGAATTCCTTGAAAAAATCCTCTGAAAGGATGACATTCAGTAATTCGGCCCAGTGCAAGAAGTTAGTAGCTTCTGCACTTGATGACACCAGAGGTAGGCAAGAGAGTGACCAAACCTTACTCTCTAACTGCAGTGAAGACAAAACCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTGCCTTCATTTCCATCTGTTATAAATTTATCAATACAAGATACAGAACTGTTGCCATCTGTAAATAAGCAAACAGGAGAAGATGGTCACTTTAGAGTCTCTACTTCTATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTAAGGAAGACAGTTCAGCATGGGCTTCATCAGCATTTCCAACAAATGATACAAGATCCAAACCTGGGTCCAGGATACAATCATTGGGAAAGCAGAAGTTTTCCAACACCGACACTGCTAAGCCTTCTAAGTCAAAATCTAAAAGAGCCTTCACTGATCCTAGTGAGACAAATCACCAACAGACTGATCCTTCATTCCTCTCAATGCCACCACTTAAAGATCTGAGATTTGATCTCAATGCAGCATCCACTATGGATGACATTGTAGTTGATGATTTGCCTAGTAGCAGTCTGCCCTTTGGCCTCGACGTGGAAAATTCATTTGATGAAACGGAGAGTTTTGGAGCAGTCCCGCATGATTATGTAGCTGGTTTAATCTCAGATCTTGATGATTGCACATCATTCCCAGAATTTAACGACATTGGTTAG 6126 0.4123 MKKHKSSVLNFRKPTAQSLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSSMLAKNLVDPYKPVEKSSAEHHMSSQYKDIDTDIINEPEEADVEHQLDAPDDDEEYDVQSDDESEDDEQTLEEDEAHITKEERQEELAALNDEIDLPIEELLKRYGGRNDESASQESSPEHSEDGDKIARSSDENGDALCANETGTGDSSMDPGRHCGESVGDVATPVNNGDVATPINNQSEYDDHQSENIKEASSEMANEDTTRGFTDEEDDGDFLQTTEDKDDETTLSEEEKLEKVDIIDPNDEIALLQKESDMPVEELLARYKKDLSDDGHGDESDYASPLSEHHENSSSNEDSGQKDVAVPMEEDIKSENLPAVEPQEKEWEVPHETSEKGEGEYNISDAAAAARSAQPTGITFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDVQLSSSICSMLSPNPFSIVDLKGLGLLFTHLEYSMTSWESDEVQAIETPSSLIMERTDKGDLEVIKPWSKCRKKLQGTNIFEEIRKAIWEERLKEAKERAAAIAWWNSLRCKRKPIYSTSLRNLVTLKHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSRSGATVFLHPSYKQKCSEVLSPLLSPIRPAVVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTFQIKNMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPAEFGESVSNLSKQNAVMSNGDPKEDVMATVSLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENSKKTPGDSKPKSKKKPKKAKFKSLKKGSLNSGTRPVKEEPQAEPMTIDDDVVSSLALVSPNSAMQKKRKKPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNLLVMHDENAETLVENEQKTSSRNKMGGKISITPMPVKWILMIKPEKVKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDATNNEKTNNTGSGKALLKVTEENIRMLLDVASVQPNRELLLQKHFYALLSCVWKLSSHVDRRQNPSATSNGLCFDKSFFGSVGQHSQNSLKKSSERMTFSNSAQCKKLVASALDDTRGRQESDQTLLSNCSEDKTMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQDTELLPSVNKQTGEDGHFRVSTSIAENRFREAARACKEDSSAWASSAFPTNDTRSKPGSRIQSLGKQKFSNTDTAKPSKSKSKRAFTDPSETNHQQTDPSFLSMPPLKDLRFDLNAASTMDDIVVDDLPSSSLPFGLDVENSFDETESFGAVPHDYVAGLISDLDDCTSFPEFNDIG 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00311 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 1228 IPR027417 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 369 475 - -
Arst9g00311 2041 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1026 1274 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1455 1472 - -
Arst9g00311 2041 ProSiteProfiles HSA domain profile. 19 91 IPR014012 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1907 1940 - -
Arst9g00311 2041 CDD DEXQc_SRCAP 514 736 - -
Arst9g00311 2041 CDD SF2_C_SNF 1044 1179 - -
Arst9g00311 2041 PANTHER HELICASE SRCAP-RELATED 15 1944 - -
Arst9g00311 2041 PANTHER HELICASE SRCAP-RELATED 15 1944 - -
Arst9g00311 2041 Gene3D - 1629 1690 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1904 1968 - -
Arst9g00311 2041 Pfam SNF2-related domain 531 803 IPR000330 GO:0005524|GO:0140658
Arst9g00311 2041 Gene3D - 1023 1274 IPR027417 -
Arst9g00311 2041 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 760 825 - -
Arst9g00311 2041 FunFam Photoperiod independent early flowering protein 1629 1690 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1455 1559 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 345 368 - -
Arst9g00311 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 736 IPR027417 -
Arst9g00311 2041 Pfam HSA domain 24 90 IPR014012 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1473 1489 - -
Arst9g00311 2041 Coils Coil 1393 1413 - -
Arst9g00311 2041 FunFam Photoperiod-independent early flowering 1 484 759 - -
Arst9g00311 2041 Coils Coil 1444 1464 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 212 272 - -
Arst9g00311 2041 SMART bromneu2 20 91 IPR014012 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 183 211 - -
Arst9g00311 2041 SMART helicmild6 1085 1168 IPR001650 -
Arst9g00311 2041 Pfam Helicase conserved C-terminal domain 1058 1168 IPR001650 -
Arst9g00311 2041 Gene3D - 760 824 - -
Arst9g00311 2041 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1059 1209 IPR001650 -
Arst9g00311 2041 Coils Coil 212 232 - -
Arst9g00311 2041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 691 IPR014001 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 153 182 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 150 475 - -
Arst9g00311 2041 Gene3D - 484 759 IPR038718 -
Arst9g00311 2041 SMART ultradead3 510 703 IPR014001 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 324 344 - -
Arst9g00311 2041 ProSiteProfiles Myb-like domain profile. 1633 1686 IPR001005 -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1 30 - -
Arst9g00311 2041 MobiDBLite consensus disorder prediction 1534 1559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00311 Arst-Chr9 2671759 2684301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00311 534 806 RAD5 or RAD16-like Gene Family AT5G43530 31.077 2.10e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g00311 SNF2_N 3.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00311 K11661 - gmx:100794898 3048.07