Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00310 ATGATGGCATTCAAAGGTTCCAAGAACAAATTTGATCATGAGCATAAACCTAAACCTAAACGACAAAAGTCACTTGAAGCTCCAAAGGAGCCTCGACGACCGAAAACTCATTGGGACCATGTATTAGAAGAGATGGTGTGGTTGTCAAAGGACTTTGAATCAGAGAGGAAATGGAAACTTGCTCAGGCCAAGAAAGTTGCTTTGAGAGCCAGCAAAGGCATGTTAGATCAGGCTACCAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAACGCTTACGAAAAGTTGCGCTAAATATTTCTAAGGATGTTAAGAAGTTCTGGACAAAAATAGAAAAGCTGGTTCTTTATAAGCATCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCGTCAATGCTGGCAAAGAATCTTGTGGATCCTTATAAACCGGTTGAGAAAAGTTCTGCTGAGCATCACATGAGTAGTCAATACAAGGATATAGATACAGACATTATTAATGAACCCGAGGAAGCTGATGTTGAGCATCAGTTGGATGCACCTGATGATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAGGATGAGGCCCATATAACCAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGAATGATGAAATTGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGGTGGCAGGAATGATGAATCTGCAAGTCAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGATAAAATAGCTAGAAGTAGTGATGAAAATGGAGATGCTTTATGCGCCAATGAAACTGGTACAGGCGACTCTAGCATGGACCCTGGTCGACACTGTGGAGAAAGTGTTGGTGACGTAGCTACTCCAGTAAACAATGGTGATGTTGCTACTCCAATAAATAATCAATCTGAATATGACGATCATCAATCTGAAAATATTAAGGAGGCTTCTAGTGAGATGGCTAATGAAGATACTACCCGTGGCTTTACTGATGAAGAGGATGATGGTGACTTCTTGCAAACAACAGAGGACAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAGTAGATATCATTGATCCCAATGATGAGATTGCATTATTGCAAAAGGAGAGTGACATGCCTGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGACATGGGGATGAATCTGATTATGCTTCTCCTTTATCTGAGCACCATGAGAACTCTTCAAGCAATGAAGATTCTGGACAGAAGGATGTTGCTGTCCCTATGGAAGAAGATATCAAGTCTGAGAACCTTCCTGCTGTTGAACCTCAGGAAAAAGAATGGGAAGTACCTCATGAAACTTCAGAAAAAGGAGAAGGCGAGTATAATATATCTGACGCAGCTGCTGCAGCAAGATCAGCTCAACCAACTGGAATCACCTTCTCTACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGTGAGTACCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTTGGCTGATGAAATGGGGCTTGGCAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAAGGGAATATGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTCAAAATTTTAACTTACTTTGGGAGTGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTGTGCATAACAACCTATAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGATGGCAGACACTCTTGAATTTCAACTCAAAACGGCGTATTCTCTTGACTGGCACACCACTGCAGAATGATCTCATGGAGCTGTGGTCTCTCATGCATTTTTTGATGCCACATGTCTTCCAATCTCATCAAGAGTTTAAGGATTGGTTTTGCAATCCTATATCTGGGATGGTAGAGGGAGAGGAGAAAGTTAACAAGGAGGTTGTTGATCGCCTGCATAATGTTCTTCGTCCATTCTTACTCCGCAGGTTGAAGCGAGATGTGGAAAAGCAACTTCCATCGAAACATGAGCATGTCATATATTGTAGACTGTCAAAGCGGCAGCGTAATTTATATGAAGACTTCATTGCTAGCTCAGAGACCCAAGCTACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCCTTTGACATGTCGGGTATTGATGTTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTCTCCTAATCCCTTTTCAATAGTAGACCTAAAAGGCTTAGGCCTCCTATTTACTCATCTTGAATATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTTCTAGTTTAATCATGGAACGCACTGATAAGGGTGACCTGGAGGTAATTAAGCCTTGGTCAAAATGTCGAAAAAAGCTACAAGGAACAAACATTTTTGAAGAGATCCGCAAAGCAATTTGGGAAGAGAGGTTGAAAGAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAAACCCATCTACTCCACAAGCCTAAGGAATCTTGTTACTCTAAAGCATCCTGTATATGATATTCATCAAGTTAAGGCAAACCCTGTTTCATATTTGTACTCATCGAAGCTGGCCGACATTGTTCTATCACCAGTTGAACGATTTCAGAGGATGACCGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCAGCACGAGCACCCTCTCCAGTTTGCTGGTGCAGCAGAAGTGGGGCAACTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTCACCATTACTGTCACCAATCAGGCCTGCAGTTGTTCGTAGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGCGGGAAATTGCAAGAACTCGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCATCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGATGTGCTGGAAGCATTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACTCAACCAGAAGAGAGGCAGACCTTAATGCAGCGCTTTAACACTAACCCCAAATATTTTCTTTTTATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACTGTTATTTTTTACGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAGGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATCGAGGAAAATATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTTGACGATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAGCTATTTTCAGGCCATAGAACATTTCAGATTAAAAATATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTAAAGAAAGTTGAGGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATATGAAGGATGATGAGCCTGCCGAGTTTGGTGAATCTGTTTCCAACTTAAGTAAACAGAATGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGTAATGGCCACTGTTTCTTTAAAAGAAGACGATGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTGCGTCCTATTGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAAATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGACCTTGGCTCAACATCAGTTGATGGAGGAACTAGAATATGAAGCTAAACAGAAAGCGGAAGCTGAGGAAGAAAATTCTAAAAAGACTCCTGGTGATTCAAAGCCCAAATCGAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTTTAAACTCTGGCACGAGACCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTGTCAGTAGTCTTGCTCTTGTATCCCCAAATTCAGCTATGCAGAAAAAACGGAAGAAACCTAAATTTACAAGTGATGGTGAGGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAGAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAACTTATTAGTTATGCATGATGAAAATGCAGAGACTCTGGTTGAGAATGAACAGAAAACGTCAAGCAGAAATAAGATGGGAGGGAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAGTGAAAAAGGGAAATCTTTGGTCCAAAGATTGTATCCCACCAGCAGATACTTGGTTACCTCAGGAAGATGCAGTATTATGTGCAGTCGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCCGGTGGGGCATATCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATATGTCTTATACTCGGTGGATGCCACAAATAATGAGAAGACAAACAATACTGGTTCTGGAAAAGCCCTTCTTAAAGTTACAGAGGAGAACATTCGCATGTTGTTAGATGTTGCTTCTGTGCAACCCAATAGGGAATTACTACTGCAGAAGCATTTTTATGCACTGCTTTCTTGTGTCTGGAAGCTTTCATCACATGTTGACCGAAGGCAAAATCCATCAGCTACCTCTAATGGTCTATGTTTTGATAAGAGTTTCTTTGGTTCTGTTGGCCAGCATTCACAGAATTCCTTGAAAAAATCCTCTGAAAGGATGACATTCAGTAATTCGGCCCAGTGCAAGAAGTTAGTAGCTTCTGCACTTGATGACACCAGAGGTAGGCAAGAGAGTGACCAAACCTTACTCTCTAACTGCAGTGAAGACAAAACCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTGCCTTCATTTCCATCTGTTATAAATTTATCAATACAAGATACAGAACTGTTGCCATCTGTAAATAAGCAAACAGGAGAAGATGGTCACTTTAGAGTCTCTACTTCTATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTAAGGAAGACAGTTCAGCATGGGCTTCATCAGCATTTCCAACAAATGATACAAGATCCAAACCTGGGTCCAGGATACAATCATTGGGAAAGCAGAAGTTTTCCAACACCGACACTGCTAAGCCTTCTAAGTCAAAATCTAAAAGAGCCTTCACTGATCCTAGTGAGACAAATCACCAACAGACTGATCCTTCATTCCTCTCAATGCCACCACTTAAAGATCTGAGATTTGATCTCAATGCAGCATCCACTATGGATGACATTGTAGTTGATGATTTGCCTAGTAGCAGTCTGCCCTTTGGCCTCGACGTGGAAAATTCATTTGATGAAACGGAGAGTTTTGGAGCAGTCCCGCATGATTATGTAGCTGGTTTAATCTCAGATCTTGATGATTGCACATCATTCCCAGAATTTAACGACATTGGTTAG 6144 0.4115 MMAFKGSKNKFDHEHKPKPKRQKSLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSSMLAKNLVDPYKPVEKSSAEHHMSSQYKDIDTDIINEPEEADVEHQLDAPDDDEEYDVQSDDESEDDEQTLEEDEAHITKEERQEELAALNDEIDLPIEELLKRYGGRNDESASQESSPEHSEDGDKIARSSDENGDALCANETGTGDSSMDPGRHCGESVGDVATPVNNGDVATPINNQSEYDDHQSENIKEASSEMANEDTTRGFTDEEDDGDFLQTTEDKDDETTLSEEEKLEKVDIIDPNDEIALLQKESDMPVEELLARYKKDLSDDGHGDESDYASPLSEHHENSSSNEDSGQKDVAVPMEEDIKSENLPAVEPQEKEWEVPHETSEKGEGEYNISDAAAAARSAQPTGITFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDVQLSSSICSMLSPNPFSIVDLKGLGLLFTHLEYSMTSWESDEVQAIETPSSLIMERTDKGDLEVIKPWSKCRKKLQGTNIFEEIRKAIWEERLKEAKERAAAIAWWNSLRCKRKPIYSTSLRNLVTLKHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSRSGATVFLHPSYKQKCSEVLSPLLSPIRPAVVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTFQIKNMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPAEFGESVSNLSKQNAVMSNGDPKEDVMATVSLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENSKKTPGDSKPKSKKKPKKAKFKSLKKGSLNSGTRPVKEEPQAEPMTIDDDVVSSLALVSPNSAMQKKRKKPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNLLVMHDENAETLVENEQKTSSRNKMGGKISITPMPVKWILMIKPEKVKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDATNNEKTNNTGSGKALLKVTEENIRMLLDVASVQPNRELLLQKHFYALLSCVWKLSSHVDRRQNPSATSNGLCFDKSFFGSVGQHSQNSLKKSSERMTFSNSAQCKKLVASALDDTRGRQESDQTLLSNCSEDKTMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQDTELLPSVNKQTGEDGHFRVSTSIAENRFREAARACKEDSSAWASSAFPTNDTRSKPGSRIQSLGKQKFSNTDTAKPSKSKSKRAFTDPSETNHQQTDPSFLSMPPLKDLRFDLNAASTMDDIVVDDLPSSSLPFGLDVENSFDETESFGAVPHDYVAGLISDLDDCTSFPEFNDIG 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00310 2047 SMART helicmild6 1091 1174 IPR001650 -
Arst9g00310 2047 ProSiteProfiles Myb-like domain profile. 1639 1692 IPR001005 -
Arst9g00310 2047 Gene3D - 490 765 IPR038718 -
Arst9g00310 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 742 IPR027417 -
Arst9g00310 2047 Coils Coil 218 238 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 330 350 - -
Arst9g00310 2047 SMART ultradead3 516 709 IPR014001 -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1461 1565 - -
Arst9g00310 2047 ProSiteProfiles HSA domain profile. 25 97 IPR014012 -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 408 481 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 156 389 - -
Arst9g00310 2047 FunFam Photoperiod-independent early flowering 1 490 765 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1479 1495 - -
Arst9g00310 2047 FunFam Photoperiod independent early flowering protein 1635 1696 - -
Arst9g00310 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Arst9g00310 2047 Coils Coil 1399 1419 - -
Arst9g00310 2047 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1280 - -
Arst9g00310 2047 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Arst9g00310 2047 Coils Coil 1450 1470 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1913 1946 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 218 278 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 189 217 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1 37 - -
Arst9g00310 2047 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 7 37 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 375 389 - -
Arst9g00310 2047 SMART bromneu2 26 97 IPR014012 -
Arst9g00310 2047 CDD DEXQc_SRCAP 520 742 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 159 188 - -
Arst9g00310 2047 CDD SF2_C_SNF 1050 1185 - -
Arst9g00310 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1234 IPR027417 -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1910 1974 - -
Arst9g00310 2047 Gene3D - 1029 1280 IPR027417 -
Arst9g00310 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Arst9g00310 2047 Gene3D - 766 830 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1540 1565 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 351 374 - -
Arst9g00310 2047 PANTHER HELICASE SRCAP-RELATED 11 1950 - -
Arst9g00310 2047 PANTHER HELICASE SRCAP-RELATED 11 1950 - -
Arst9g00310 2047 MobiDBLite consensus disorder prediction 1461 1478 - -
Arst9g00310 2047 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Arst9g00310 2047 Pfam HSA domain 30 96 IPR014012 -
Arst9g00310 2047 Gene3D - 1635 1696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00310 Arst-Chr9 2669353 2684301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00310 540 812 RAD5 or RAD16-like Gene Family AT5G43530 31.077 2.02e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g00310 SNF2_N 3.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00310 K11661 - gmx:100794898 3065.79