Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00206 ATGGCTAGAGAAGGTCTCGGATTTGAAATCACGGAGCTAAGGTTAGGTTTACCCGGCGAACCTAAAAGTTTGGTGAGTACTAATAAGAATGAGAAGAAGAGAATGTTTTCCGAGATTGATGACAACGGTGAGAAAGAGAAGAAGAGTAACACTGGGGGCAACCTGAAGACTACTGAGTCGAAGGCTCAGGTCGTAGGGTGGCCTCCAGTGTGCTCGTACCGGAAGAAGAACAGCATGAATGAGGCTACAAAGATGTATGTGAAGGTTAGCATGGATGGTGCTCCTTTCTTGAGAAAAATTGATTTGGGAATGCATAAGGGATACTCTGAGTTAGCCTTGGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGGGAAGCATTGAAGGATCCAGAGAACTGTGAACACGTTCCCATTTATGAGGACAAAGAGGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTATGGAATCATGCAAGAGGCTTAGGATTATGAAGAGATCAGATGCGTGGCAAATTGAAAAGACATATATAGAGATAGATGAAATTAAAGAAAAAAATGTTTAG 576 0.4288 MAREGLGFEITELRLGLPGEPKSLVSTNKNEKKRMFSEIDDNGEKEKKSNTGGNLKTTESKAQVVGWPPVCSYRKKNSMNEATKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCYGMGEALKDPENCEHVPIYEDKEGDWMLVGDVPWEMFMESCKRLRIMKRSDAWQIEKTYIEIDEIKEKNV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00206 191 FunFam Auxin-responsive protein 79 180 - -
Arst9g00206 191 SUPERFAMILY CAD & PB1 domains 77 169 - -
Arst9g00206 191 Gene3D - 78 181 - -
Arst9g00206 191 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
Arst9g00206 191 MobiDBLite consensus disorder prediction 18 59 - -
Arst9g00206 191 MobiDBLite consensus disorder prediction 26 52 - -
Arst9g00206 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 173 IPR003311 GO:0005634|GO:0006355
Arst9g00206 191 Pfam AUX/IAA family 31 174 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00206 Arst-Chr9 1549573 1554277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00206 21 176 B3 DNA Binding Superfamily AT5G20730 26.471 1.26e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst9g00206 AUX_IAA 3.5e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00206 K14484 - gmx:547784 272.322