Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00085 ATGTTCCTAATGCAGATTATAGTGTGGAAATATCTATACAAAACAAGACATTCAGAGGTATTGAGTACGAAAACGGCACTGTTGAGAACTGTGATCCTGCAATATTTTCCAAGATTTCTAAGGTTTCTTCCATTAGCATCGGAAGTTAAAAAGACAGCTGGTGTTTTTGCAGAAAATGCACTGCTTGGAGCCATTTACTATTTGATTTGGTTTATGCTAGCTAGTCATATAACTGGCTCCGTTTGGTACTTACTTGCCATAGAACGCAATGACACATGTTGGAACAATGTTTGTCTTGAAGATAATAGATGTAATAGTCATTTCTTGTATTGTGGAAGTACCAATAAGCACATCCCAGGGTTTGATGCTTGGAAAAATGTCAGTGAGGATGTTCTTGTAAAGAAGTGCTTTGTTGATGGTGAGTTCAATTATGGAATCTTTGCTCAAGCAATCAAGAGTGGTATTGTTGCTTCTGTTGAAGTGTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGCCTTCAAAATCTGAGTACAATTGGCCAAGGGCTTTCAACCAGCACCTACAGTAAAGAGGTGTGGTTTTCCATAGCAATAGCTGTTATGGGGCTCATCCTTTTCGCACTTCTGATTGGAAACATGCAGACATACCTTGACTCAATGTCGGTTCATCTTGACGAAATGAGGATCCAAAGACGTGATTCCGAGCTATGGATGCATCATCGCTCGCTTCCTCCAGAACTAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATGATCAATACAAGTGGCTGAATACCCGAGGTGTGGACGAAGAGAGCTTGATGAAGAGCCTTCCAAAAGATTTAAGGAGAGACATCAAACGGCATCTTTGTTTGAATCTGGTTAAAAGGGTTCCACTCTTTGCTAACATGGAGGAACGCCTGCTCGATGCTATATGCGAGCGACTGAAACCTACTCTGTACACAGAGGGCACTGACATAGTTAGGGAAGGAGACCCTGTCAACGAGATGCTCTTCATCATCCGTGGACGCCTAGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTCTTTAACAGAGGGCTTCTCAAAGAAGGAGACTTCTGTGGTGAGGAGCTACTAACATGGGCACTAGATCCAAAAGCTGCAGCAAACTTGCCATCATCTACTAGGACAGTGAAGGCCATAAATGAGGTCGAGGCATTCGCATTGGAAGCCGAGGAGCTTAAGTTTGTCGCTTCGCAGTTTAGATACATTCATAGTAGGCAGGTTCAGCATACCTTCAGATTCTACTCACAGCAATGGAGGACATGGGCCGCAATCTACATTCAAGCCGCGTGGAGGAGGTATATGAGGAGGAAATACACCATGCAAAGAAGGCAGGAGGAAGAGTATTATTATGATTCTGATGACAGTGGTGGTGATTCTGCAAAGGCCTTGGTTAAACGTTCCTCAAGTTCATCTAGCTTTGCCACAACCATGTATGCTTCACGCTTTGCCGGGAATGTACTTCACGGTCATAGGCTTCGTGAAGCAGGTAGTTCCACTAGTCTAGGAAGAATTCAAAAACCATCTGAACCTGACTTCAGTCATTATGGTCCAAAGTGA 1611 0.4277 MFLMQIIVWKYLYKTRHSEVLSTKTALLRTVILQYFPRFLRFLPLASEVKKTAGVFAENALLGAIYYLIWFMLASHITGSVWYLLAIERNDTCWNNVCLEDNRCNSHFLYCGSTNKHIPGFDAWKNVSEDVLVKKCFVDGEFNYGIFAQAIKSGIVASVEVFPKFCYCLWWGLQNLSTIGQGLSTSTYSKEVWFSIAIAVMGLILFALLIGNMQTYLDSMSVHLDEMRIQRRDSELWMHHRSLPPELRXXXXXXXXXXYDQYKWLNTRGVDEESLMKSLPKDLRRDIKRHLCLNLVKRVPLFANMEERLLDAICERLKPTLYTEGTDIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRYMRRKYTMQRRQEEEYYYDSDDSGGDSAKALVKRSSSSSSFATTMYASRFAGNVLHGHRLREAGSSTSLGRIQKPSEPDFSHYGPK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00085 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 530 - -
Arst9g00085 536 SUPERFAMILY cAMP-binding domain-like 227 420 IPR018490 -
Arst9g00085 536 Gene3D - 2 220 - -
Arst9g00085 536 ProSiteProfiles cAMP/cGMP binding motif profile. 301 384 IPR000595 -
Arst9g00085 536 FunFam Cyclic nucleotide-gated ion channel 1 299 417 - -
Arst9g00085 536 CDD CAP_ED 301 432 IPR000595 -
Arst9g00085 536 SMART cnmp_10 301 432 IPR000595 -
Arst9g00085 536 Gene3D Jelly Rolls 299 419 IPR014710 -
Arst9g00085 536 ProSiteProfiles IQ motif profile. 437 465 IPR000048 GO:0005515
Arst9g00085 536 Pfam Cyclic nucleotide-binding domain 322 411 IPR000595 -
Arst9g00085 536 Gene3D Helix hairpin bin 224 292 - -
Arst9g00085 536 SUPERFAMILY Voltage-gated potassium channels 23 217 - -
Arst9g00085 536 MobiDBLite consensus disorder prediction 511 536 - -
Arst9g00085 536 Pfam Ion transport protein 29 222 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00085 Arst-Chr9 520229 523956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00085 3 530 Ion Channels AT1G15990 68.156 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00085 K05391 - gmx:100810453 807.364