Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00027 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACTTGAGTGAGGGACAGCATCCTATGCATGTGCCATACGTGCAAGAACACGAGCATCATGGATTGCATCATATGAGTAACGGGAATGGGATGGAAGATGATCAGAATAATGGTGATGATACTAACTGCGGTGGAAGTGAGAGTGTTGAAGGTGAAATCCCTTCTAATCATGGAAACCTGCCTGAGAATCACACGGCGATGATCGATCAAGGGGGTGATGTTGGGGATCAACTTACATTGTCTTTTCAGGGCCAAGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTACTACTACTATTGGGAGGCCGTGAAGTACCTCCAACTATGCCTGCCATGCCAATATTGCCCCACCAAAGTAACCAGCAGGGATTTACTGGTACTCCACAAAAGTTCAGCGTCCCTCAAAGATTAGCCTCATTGCTAAGATTTCGTGAAAAAAGGAAAGAAAGAAATTTTGACAAAAAAATTCGCTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCTAAGCCCAATCATGATGAATCTGCATCAGGTGCAGCAAACTGGGGGGCAAATGAAAGCTGGTCATCAGATAACAATGGATCTCAACAAGATATCGTTTGTCGGCACTGCGGCATTAGTGAGAAGTGCACACCGATGATGCGACGTGGACCTGAAGGGCCAAGAACACTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTTAGGGACCTATCGAGAGCCGCGTCCATGGCTGGACATAATTCTCAGTTAAACAAGAATGAGAATAAAGATTTTGAGGCCAATCAGATGGTACAAACAGTGGCAGCTGATGTTGAGGATTCTTCATGA 915 0.4437 MDGIHGGDSRIHLSEGQHPMHVPYVQEHEHHGLHHMSNGNGMEDDQNNGDDTNCGGSESVEGEIPSNHGNLPENHTAMIDQGGDVGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPAMPILPHQSNQQGFTGTPQKFSVPQRLASLLRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNHDESASGAANWGANESWSSDNNGSQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAASMAGHNSQLNKNENKDFEANQMVQTVAADVEDSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00027 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 278 IPR000679 GO:0006355|GO:0043565
Arst9g00027 304 Pfam tify domain 88 116 IPR010399 -
Arst9g00027 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Arst9g00027 304 MobiDBLite consensus disorder prediction 30 74 - -
Arst9g00027 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Arst9g00027 304 PANTHER GATA TRANSCRIPTION FACTOR 28 26 291 IPR045280 GO:0006355
Arst9g00027 304 CDD ZnF_GATA 225 267 IPR000679 GO:0006355|GO:0043565
Arst9g00027 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Arst9g00027 304 MobiDBLite consensus disorder prediction 40 74 - -
Arst9g00027 304 Pfam CCT motif 151 193 IPR010402 GO:0005515
Arst9g00027 304 SMART tify_2 82 117 IPR010399 -
Arst9g00027 304 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515
Arst9g00027 304 MobiDBLite consensus disorder prediction 185 219 - -
Arst9g00027 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 284 - -
Arst9g00027 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Arst9g00027 304 Gene3D - 219 270 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00027 Arst-Chr9 239379 242942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00027 1 303 Tify Gene Family AT1G51600 62.866 1.91e-136 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst9g00027 CCT 3.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00027 - - pvu:PHAVU_008G254600g 525.013