Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03963 ATGGTTGATTTTGTGTTGGTGGGATTTCTGTCCCTGCTGCTGGGATGTTGTTGTCCTGTTTATGGTGTTGGCGAAGGAGGTTGGAGCAATGCCCATGCAACCTTCTACGGAGGGGGTGATGCTGCTGACACAATGGGTGGAGCGTGTGGATATGGGAACCTGAACAGCGAAGGGTACGGGAGAAACACAGCAGCTGTGAGCAGTGCCCTCTTCAACGGAGGCCTGAGCTGCGGAGCATGCTTCCAGATCAAGTGCGTCAATGACAAGAGGTGGTGTCTGCCGAGGTCGGTGGTGGTCACCGTCACCAATTTCTGCCCTCCAAACCACGCCCTCCCTAGCACCGCCGGCGGATGGTGCAACCCTCCCCTCCACCACTTCGATCTGGCTCAGCCTGTCTTCCAACAGATTGCCAATGTCAGAGCTGGCATAGTCCCTGTTGCCTACACAAGGGTACCATGCCAAAAGAGAGGAGGCATGAGGTTCACCATCAACGGCCATGCATACTTCAACTTAGTACTAATCCAAAACGTCGGAGGTGCAGGCGATGTGCATGCCGTTTCAATCAAAGGCTCCAACACCAATTGGCAATCCATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACTCATACCTCAACGGCCAAACCCTCTCCTTCAAGGTTACCACCAGTGATGGCCGCACCTTGATCTCTAACAATGTTGCCCCTCCTTCCTGGTCCTTTGGCCAGACCTTCACGGGCCTACAATTCCCTTAA 756 0.5423 MVDFVLVGFLSLLLGCCCPVYGVGEGGWSNAHATFYGGGDAADTMGGACGYGNLNSEGYGRNTAAVSSALFNGGLSCGACFQIKCVNDKRWCLPRSVVVTVTNFCPPNHALPSTAGGWCNPPLHHFDLAQPVFQQIANVRAGIVPVAYTRVPCQKRGGMRFTINGHAYFNLVLIQNVGGAGDVHAVSIKGSNTNWQSMSRNWGQNWQSNSYLNGQTLSFKVTTSDGRTLISNNVAPPSWSFGQTFTGLQFP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03963 251 Gene3D - 158 250 IPR036749 -
Arst8g03963 251 Gene3D - 21 154 IPR036908 -
Arst8g03963 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Arst8g03963 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Arst8g03963 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Arst8g03963 251 PANTHER EXPANSIN-A15 15 249 IPR002963 GO:0009664
Arst8g03963 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Arst8g03963 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Arst8g03963 251 CDD DPBB_EXPA_N 27 153 - -
Arst8g03963 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Arst8g03963 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Arst8g03963 251 FunFam Expansin 158 250 - -
Arst8g03963 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Arst8g03963 251 SMART dpbb_1 63 148 IPR007112 -
Arst8g03963 251 FunFam Expansin 19 154 - -
Arst8g03963 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03963 Arst-Chr8 49808838 49810277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03963 7 250 Expansin Gene Family AT2G03090 72.177 6.77e-135 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03963 - K20628 tcc:18604721 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05162 3 126969109 126970771 Arst8g03963 8 49808838 49810277 ECH
Arst8g03963 8 49808838 49810277 Arst8g03963 8 49808838 49810277 ECH