Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03944 ATGGCTGCTCCTGTCAAAGACTATGTCTGGGAAAAAGAATCAGACGGCTTGCCGTGGGACACACTTCGCCATGTTTACGAGCTTGTGCAGAGTGGCAATGAATCATTTCGAGAGAATAGAATGGAAGAGGCAATCAGCTTTTATTCGCGAGCCAATAACATTAAATCTGGTGATATGGTCATCCTAGGCAATCGCTGTGCAGCTTATATTAGGATTAGTCAATATTTGAAGCATAGAACTCCATCGGCTTCGGAACATAGACCATTGAGTGGGCTTGATCCTACAACCCTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTGCAAAGTAATTCAGCAAATCCTTACATTTTAAAGGCCCATGCACTTCTTTTGTTGGAGAAATATGAGAAAGCCAGGGATGTTATTCTTTCCGGTCTACAAGTCGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCAAAATTTGGAAAGACTGCCATCTCATTCAACAAGGATGAATAGACATGCACAACCAGAGCGAAATGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGACATTCCTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTTTGTGCAGGACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATAGAGAAGAACTTTCCTGAGGAGTATGCAGAACGGAAACAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCTTTAGCCGAGTATGGCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCTGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGTAATGCAGCAGAAAATGCTCGATCATGGATAAGAAGAGCTAGAGAAGCAACAAGACTAGATCCAAGAAGAATCGAGAGACTCCTGAATGTTGAAGCAATGATGCCGTCGACACGAGACCCTGAGCGTTTCAGTTTTTGGCTGGCTACCCTATCAAACCGAAGGCCTTCGGACAGATTGGATCTCCTTCGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTTATATTTCTTAGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1422 0.4297 MAAPSSPPPFHDALPDVKDYVWEKESDGLPWDTLRHVYELVQSGNESFRENRMEEAISFYSRANNIKSGDMVILGNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSANPYILKAHALLLLEKYEKARDVILSGLQVDPFSNPLQASLQNLERLPSHSTRMNRHAQPERNDEFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIICSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDPRRIERLLNVEAMMPSTRDPERFSFWLATLSNRRPSDRLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03944 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Arst8g03944 485 SMART lon_5 278 477 IPR003111 -
Arst8g03944 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Arst8g03944 485 SUPERFAMILY RING/U-box 189 258 - -
Arst8g03944 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Arst8g03944 485 SMART ring_2 195 232 IPR001841 -
Arst8g03944 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 273 IPR013083 -
Arst8g03944 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Arst8g03944 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Arst8g03944 485 Gene3D Tetratricopeptide repeat domain 35 173 IPR011990 GO:0005515
Arst8g03944 485 PANTHER RING FINGER PROTEIN 127 28 477 - -
Arst8g03944 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 475 IPR003111 -
Arst8g03944 485 SUPERFAMILY TPR-like 37 166 IPR011990 GO:0005515
Arst8g03944 485 CDD RING-HC_LONFs_rpt2 192 236 - -
Arst8g03944 485 Gene3D - 277 379 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03944 Arst-Chr8 49640356 49646066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03944 193 240 C3H Transcription Factor Family AT2G42030 41.509 7.81e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03944 - - lja:Lj0g3v0312049.1 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g03944 8 49640356 49646066 Arst8g03944 8 49640356 49646066 ECH