Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03914 ATGATGAATCCAACAATGGAAGAAGAAGATTATAATCAAGGACAACACATCAACAAGAAGAACAAGCATGTGTGCAAGTTCTGCAGCAGGAGCTTCCCTTGTGGTAGATCCTTGGGTGGTCACATGAGGTCTCATGTCATCAATGGTGACATAGATCATCACCATGACAATAACAAGCTTCTTGCATCATCATCAACAGCAAAAATTAAGAAGATGCTTTCATCTTCTTCATCTACAGAAAACAACACAGGAATAGGTTCTGAAGGCTATGGTCTGAGAGAGAATCCCAAGAAGACATGGAGGCTAACCAATTCAACAAGTGAAGACAATTCTCTGTTGTTCTGCAAGGATTGTGGTAAAGGTTTTCAGTCTTGGAGAGCACTATTTGGCCACATGAAGTGCCATTCTTCTGAGAAAGTAGAGAGCATGGAGTGTGATCAAGATTCATCATGGACTAACAATAGTGCTAGCCATTCTGATAATGAAGAAGCCAATGCTCCAAGCAGAAGGAGAAGATCCAAAAGAACAAGAACAAGGTACATAGCACCATTATCAGCACCAGCAGCAACAACAACTGATTCTTCTGTTTCTGAGGCTGATGAGCATGAACAAGAAGAAGTTGCTATGAGCTTGATGATGTTAAGCAGGGATTTGAGTCCATGGTGTGGTGTCAATTCTGTTTCTGAGTTCTCTAAGAACAAGAACAAGAAGCTTGTCAACATTGGTTCTGAGTTTTCAAAATTAGGCAGCTATTTGAGTTCTCCAAATCTAAGCTCCAAAGGGAAGAAAAGTTCAGAATTTTTGGCTACTGAGAGTGCCAAAGGAGTTAAGGTGATGAACAACACCACAGTTTCAGTTAATGGTTTCAGCAAGATTATTGGGAAGGATAAGAAAAAGTATGAACTTGATTCTGAGTCTGCATTTGAAGAAGGTACTACTAACAATAAGTACAATTCAATTAAGGCAAAGTTTTGGGATTGTGGATCAAACAAAAAGCCTAATTCATCAGAAGGTGAATTCAGCATCAAGAGCAGTTCTTCTCATAATCATAAGAGAGGAAAGTTTGAGTGTACAACCTGCAACAAGATCTTCCATTCATACCAAGCTCTTGGGGGTCACAGAGCAAGTCACAAGAAGATCAAAGGTTGCTCTTTTGCTTCAAGGAATAATAATGATCAGAGCAGTGAAAACAGCATTGAGTTTGAAGCTGAAGCTGAAGCTGAAGCAGAACATGAAGAAGCACCACCACCAGCACCATCATCACCCACCCCCACTGACAACAACAATGAATATGCATCACAACAAGTACATGAATTTGGTAATAATAGTAATGGTTTTGACAGAGAATCCAAGAAGGGAAACAAGAACAAGGGGCATGAATGTCCAATTTGCTTTAAGGTATTTTCATCTGGTCAAGCCTTGGGTGGACACAAGAGGTCCCATATGGCTTCTGCTTCTGATACTGGGAACTTTCATCAAACAGTTGTACTTCAAGAATCTTCAGTGCCTGAGATTAGGGACTTGCTTGATCTCAATCTTCCTGTTGCTGAAGCTGCTGCTACTGAGGAAGATGATGAAGAAGAAATCAATGCTCATGCTTCTGATTCTTACACTACTTGGTGGGAAAATCACAAGCAGGAGGCATTGGTAGGTCTCATGTCTAACTAG 1668 0.4053 MMNPTMEEEDYNQGQHINKKNKHVCKFCSRSFPCGRSLGGHMRSHVINGDIDHHHDNNKLLASSSTAKIKKMLSSSSSTENNTGIGSEGYGLRENPKKTWRLTNSTSEDNSLLFCKDCGKGFQSWRALFGHMKCHSSEKVESMECDQDSSWTNNSASHSDNEEANAPSRRRRSKRTRTRYIAPLSAPAATTTDSSVSEADEHEQEEVAMSLMMLSRDLSPWCGVNSVSEFSKNKNKKLVNIGSEFSKLGSYLSSPNLSSKGKKSSEFLATESAKGVKVMNNTTVSVNGFSKIIGKDKKKYELDSESAFEEGTTNNKYNSIKAKFWDCGSNKKPNSSEGEFSIKSSSSHNHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCSFASRNNNDQSSENSIEFEAEAEAEAEHEEAPPPAPSSPTPTDNNNEYASQQVHEFGNNSNGFDRESKKGNKNKGHECPICFKVFSSGQALGGHKRSHMASASDTGNFHQTVVLQESSVPEIRDLLDLNLPVAEAAATEEDDEEEINAHASDSYTTWWENHKQEALVGLMSN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03914 555 SMART c2h2final6 23 45 IPR013087 -
Arst8g03914 555 SMART c2h2final6 355 377 IPR013087 -
Arst8g03914 555 SMART c2h2final6 459 481 IPR013087 -
Arst8g03914 555 SMART c2h2final6 113 135 IPR013087 -
Arst8g03914 555 ProSitePatterns Zinc finger C2H2 type domain signature. 357 377 IPR013087 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 146 162 - -
Arst8g03914 555 SUPERFAMILY beta-beta-alpha zinc fingers 355 481 IPR036236 -
Arst8g03914 555 SUPERFAMILY beta-beta-alpha zinc fingers 112 140 IPR036236 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 387 430 - -
Arst8g03914 555 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 540 - -
Arst8g03914 555 ProSitePatterns Zinc finger C2H2 type domain signature. 461 481 IPR013087 -
Arst8g03914 555 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 329 343 - -
Arst8g03914 555 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Arst8g03914 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 73 88 - -
Arst8g03914 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Arst8g03914 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 382 IPR013087 -
Arst8g03914 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 459 486 IPR013087 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 145 202 - -
Arst8g03914 555 MobiDBLite consensus disorder prediction 328 353 - -
Arst8g03914 555 Pfam C2H2-type zinc finger 459 483 - -
Arst8g03914 555 Pfam C2H2-type zinc finger 115 137 - -
Arst8g03914 555 Pfam C2H2-type zinc finger 355 379 - -
Arst8g03914 555 Pfam C2H2-type zinc finger 23 45 - -
Arst8g03914 555 SUPERFAMILY beta-beta-alpha zinc fingers 20 46 IPR036236 -
Arst8g03914 555 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03914 Arst-Chr8 49451763 49454085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03914 352 525 C2H2 Transcription Factor Family AT3G60580 36.723 4.47e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g03914 zf-C2H2_6 5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03914 - - adu:107463637 1068.53