Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03893 ATGAACATAAAAAAGGGTGAGATTGAGAAGGTGAATTGGAAGAATTTGAGTTACAGTGAATTTGTGGAGAGATTCATGCAAAAAAACAAACCTTTGTTGCTCAATGGATTCTCGGAACATCACAATTGGAGAGCTTCAGTTGATTGGGTCACCCCTCTTGGCCACCCCAATTTTCAATTTTTCTCCACAAATTTTGGGGATTCCAAAGTTCAGGTTGCAGATTGTGACAAAAGAGAGTTCACCGATCAGAAAAGGGAGGAGATGCTGGTTTCGGAGTTTATAGGACGTTGCCTTCAAGATGTTGAAGGTTCTGCAGTCCAATGTAGCAATAGTCACTCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGAATATGTAGCTTATAAAACTCCAATGTTCTTTTGTGATGATTGGCTTAACCTGTATCTTGACAACTACAGAATGCATACTGATTCTGACACATACCAAGAAAATAACGAAATATGTTGCTCTGACTATCGTTTTGTATACATGGGAGTTAAAGGATCTTGGACTCCTCTTCATGCCGATGTTTTCCGGTCATATAGCTGGTCGGCAAATGTTTGCGGAAAAAAGAGATGGCTTTTTCTAGATCCTTCCCAACATCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTCAAAAAGGCTATCTGGTTAGAATGCATGCAAGAAGCAGGTGAAATTATATTTGTTCCCAGTGGATGGTACCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCGTATAACCTTTCATGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAAGAATACATAGAAGACATCAAGGATGTATGTGAGGATTTCGAAGGTCTTTGCCAGCGCAATCTTGCTGCTAACACGGGGATGAACTTTTATGACTTCTTTACTTTCATATCACGCTTCACCTTGGCCAACATTGTCTTGCTTTGTTATATAAATGGAAGACATGGAAATATCACTCAAATCTCATCAACAATACCTCAGCATTTATTGATGAATCTTGGATCCATAAGGAAGGTTGCATTGGAGATGAAAGACAGGCATGCTCTAAAAGGAAATCAGGATCGCGCTGTGGACATTATAGAAACACTTGAAAATCCTAGGTTTTGCAAATTGTGCATGGATATAGGAAGAACATTTGCAATGATACATGAAGAGTCTCATTTGTCCTTTGATTTCGAGAGCGCTTCGGCTGGTGAAATAGCGGATCTCACTGTTTTGAAAGCATACACTTCATCTGAGTTCTACACACCTGAAGATCTTGTTGAATTTATAGACAATGCTGTTGCAGAACATGGTGACTGTTACATCAACTCATCTGTAATATAA 1440 0.384 MNIKKGEIEKVNWKNLSYSEFVERFMQKNKPLLLNGFSEHHNWRASVDWVTPLGHPNFQFFSTNFGDSKVQVADCDKREFTDQKREEMLVSEFIGRCLQDVEGSAVQCSNSHSVPYLKDWHFVKEYPEYVAYKTPMFFCDDWLNLYLDNYRMHTDSDTYQENNEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQHHLVFDRNMKNCVYNIFDEVSDSKFPGFKKAIWLECMQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCEDFEGLCQRNLAANTGMNFYDFFTFISRFTLANIVLLCYINGRHGNITQISSTIPQHLLMNLGSIRKVALEMKDRHALKGNQDRAVDIIETLENPRFCKLCMDIGRTFAMIHEESHLSFDFESASAGEIADLTVLKAYTSSEFYTPEDLVEFIDNAVAEHGDCYINSSVI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03893 479 Gene3D Cupin 2 279 - -
Arst8g03893 479 ProSiteProfiles JmjC domain profile. 123 295 IPR003347 -
Arst8g03893 479 Pfam Cupin-like domain 20 278 IPR041667 -
Arst8g03893 479 SMART cupin_9 115 295 IPR003347 -
Arst8g03893 479 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 9 327 - -
Arst8g03893 479 SUPERFAMILY Clavaminate synthase-like 17 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03893 Arst-Chr8 49285548 49290640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03893 6 287 Glycosyltransferase AT1G78280 22.222 8.48e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Arst8g03893 Cupin_8 2.6e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03893 - - aip:107632417 886.715