LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g03828	ATGGGTTGCGTGTTCGGGAAGCCGTCCGGTAACGAAGCTCAGCACCGTCACCGGAGCAAACAGAGAAGCTCTGCTCGCGATGCAAGCGATAATAGTGATATTAATAATGCCGTTAGGGTTCGGGAAAAGCAGAGGAACCGCCGGAACTCCGGCGGCGATGTTCCGGTAAGCCTTCCGGCACCGGAACGCCGGAAGCCGAGGCTCGATCCGTTCGCGGTTACTCAGCAGGGATGGCCGTCGTGGCTTATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGCCGCGCCAACACCTTTGAGAAACTCGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTTTGAGTGGAAAGATTGTGGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTCTGAGGAAGCTTGATCATCCAAATGTTGTGAAGCTTGAGGGATTGGTCACTTCAAGAATGTCTTGCAGCCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCAGGTCTTGCAGCTGGTCAAGGTGTCAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTGCTCTCAGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTCTTTGACCCTAAGCAGAAGCAGGTCTTGACGAGCCGAGTTGTAACTCTCTGGTATCGTCCCCCTGAGCTGCTTCTTGGAGCCACATTTTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGTTGTATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGGACAGAGGTTGAACAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAATTGCCAAATGCTACAATTTTTAAGCCACAGCAGCCATATAAACGTTGCATCACAGAAACTTTCAAGGATTTCCCCCCATCTTCAATACCTCTGATTGAAACTCTTCTTGCAATAGATCCTGATGGTCGTGGCACTGCCTCAGCTGCTCTAAATAGCGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCTTCGAGTTTACCAAAGTATCCTCCCAGCAAAGAACTGGATGTAAAACTAAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTACATGGAAAGGCTAATGATGGTGCCAAAAGAGTCAGAGCACGTGAGCGTGGTCGAGCTATTCCGGCCCCTGAAGCTAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTAGTGAACCACACAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCCCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCTTCACAAAAAGGGCCTGTTTCATTTGGTGCCACTGACACTACTTCCTTTGGCTCAGAGACATTTGATTCTAAACAATCTCATCATGATGGAACTCATAGAGGTAGGAAAACCAGAAAAGAAGACTCAAACACTGCCTCATCATGGAAATTCATGCGTCCATTCAAACCATCAACAGTTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA	1677	0.4615	MGCVFGKPSGNEAQHRHRSKQRSSARDASDNSDINNAVRVREKQRNRRNSGGDVPVSLPAPERRKPRLDPFAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLSGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPKQKQVLTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCITETFKDFPPSSIPLIETLLAIDPDGRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALHGKANDGAKRVRARERGRAIPAPEANAEIQTNLDRWRVVNHTNAKSKSEKFPPPHQDGAVGYPQDASSQKGPVSFGATDTTSFGSETFDSKQSHHDGTHRGRKTRKEDSNTASSWKFMRPFKPSTVGLSMDLLFRSK	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	420	442	-	-
	Arst8g03828	558	SMART	serkin_6	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g03828	558	FunFam	probable serine/threonine-protein kinase At1g54610	88	183	-	-
	Arst8g03828	558	FunFam	probable serine/threonine-protein kinase At1g54610	184	425	-	-
	Arst8g03828	558	ProSiteProfiles	Protein kinase domain profile.	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g03828	558	Gene3D	Phosphorylase Kinase; domain 1	88	183	-	-
	Arst8g03828	558	SUPERFAMILY	Protein kinase-like (PK-like)	95	390	IPR011009	-
	Arst8g03828	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	1	69	-	-
	Arst8g03828	558	ProSitePatterns	Protein kinases ATP-binding region signature.	107	130	IPR017441	GO:0005524
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	510	533	-	-
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	488	509	-	-
	Arst8g03828	558	Pfam	Protein kinase domain	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g03828	558	Gene3D	Transferase(Phosphotransferase) domain 1	184	425	-	-
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	420	537	-	-
	Arst8g03828	558	MobiDBLite	consensus disorder prediction	11	27	-	-
	Arst8g03828	558	PANTHER	CELL DIVISION PROTEIN KINASE	99	389	-	-
	Arst8g03828	558	CDD	STKc_CDK9_like	101	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g03828	Arst-Chr8	48711515	48715704	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g03828	93	422	Core Cell Cycle Gene Families	AT5G10270	51.275	2.75e-116	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst8g03828		Pkinase	2.4e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g03828	K08819		-	gmx:100807756	957.977