Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03808 ATGATGTCGTCGTCTTGGGCATCAATGGAAGCTGAGACAGAACACCAACAACAAACCCACAACGACCGTGATTTCACTTCCTTATGTTCTTTCAACAATAACTTGCCTTTCATGGAGGTTGATGATGTCAATGACATCATGATGATGATGACGATGATGAGAGACATGTCTAACTTCTTCCCTGAACCAGACACCACCAACAACAACAACCTCGTACTCCTTCATCATCACTCATCATCATCTTCTTCTTCTTCTTCTTCGTCATCACACCTTCAATGCTTTCTCCCTCCTCCTCCTCCACCAAACCCATTTGACATGCCTACCATGGCTTCCTTCCTTGACCCTCATCAAGCTTCCATAACCGCCACTACTGATTTTGGAGGTTTTCATCATCACAACTTGGAGGAACTAGGTTCTTGTTCTTCTTCTGGAAAACCCGCACCACCACCACCACCACCATTGTTCTTCAACAGATCCAAGATTTTGAGACCCCTTGATGATTCTCTACCTCCATCTGGAGCACAACCAACTCTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACTCCTCATCACAACAACAACAAGGTGGTGTTCTTGGAGAAGATGATAACAATAATAATAAGAATAGTATGAAGAGAAAGGTGATGATGGAGATGGAAGATAATGGAAGCTTTGATGGGTCATCGGCATTCAACTATGATTCCGGCGATGACTTGATTGAAACCAATAACAAGAAGAATAATCAGAAAGGAGGTGGTGGCAAGAATAAGAAAGGGATGCCGGCGAAGAACTTGATGGCGGAGCGGCGTCGCCGGAAGAAGCTCAATGATAGGCTCTACATGCTCAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATATTAGGAGATGCAATTGAATATCTGAGGGAACTGCTGCAGAGAATCAATGAGCTTCATAATGAATTGGAATCATCATCATCAACTTCAACTAATTCTGGAAGTGGTTCAGTCATGACAGCAGTACCAACAGTAGTAGCCTCATCAAGCTTCTATCCATTGACACCAACTCCACCGTCACTCCCAACCCGCATTAAAGAAGAGATTTGCCCCACTTCACTTCCTAGTCCCAATGCTCAACCTCCTAGGGTTGATGTGAGGTTGAGAGAAGGAAGGGCAGTGAACATTCACATGTTTTGTGGTCGGAAAGCAGGGCTTCTGCTGTCAACAATGAGGGCATTGGACACACTTGGCTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTGGATATTTTTAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTGCATCCAGAGCAAATCAAGGCAGTGCTCTTGGATACAGCTGGGTACCCTGCCATCATCTAA 1395 0.4437 MMSSSWASMEAETEHQQQTHNDRDFTSLCSFNNNLPFMEVDDVNDIMMMMTMMRDMSNFFPEPDTTNNNNLVLLHHHSSSSSSSSSSSSHLQCFLPPPPPPNPFDMPTMASFLDPHQASITATTDFGGFHHHNLEELGSCSSSGKPAPPPPPPLFFNRSKILRPLDDSLPPSGAQPTLFQKRAALRKNNSSSQQQQGGVLGEDDNNNNKNSMKRKVMMEMEDNGSFDGSSAFNYDSGDDLIETNNKKNNQKGGGGKNKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLRELLQRINELHNELESSSSTSTNSGSGSVMTAVPTVVASSSFYPLTPTPPSLPTRIKEEICPTSLPSPNAQPPRVDVRLREGRAVNIHMFCGRKAGLLLSTMRALDTLGLDIQQAVISCFNGFALDIFRAEQCKEGQDVHPEQIKAVLLDTAGYPAII 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03808 464 FunFam BHLH transcription factor 256 324 - -
Arst8g03808 464 CDD ACT_UUR-ACR-like 393 453 - -
Arst8g03808 464 CDD bHLH_AtAMS_like 263 321 - -
Arst8g03808 464 MobiDBLite consensus disorder prediction 137 158 - -
Arst8g03808 464 MobiDBLite consensus disorder prediction 1 21 - -
Arst8g03808 464 SMART finulus 266 315 IPR011598 GO:0046983
Arst8g03808 464 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 96 460 - -
Arst8g03808 464 Pfam Helix-loop-helix DNA-binding domain 267 309 IPR011598 GO:0046983
Arst8g03808 464 MobiDBLite consensus disorder prediction 237 264 - -
Arst8g03808 464 MobiDBLite consensus disorder prediction 184 210 - -
Arst8g03808 464 Coils Coil 299 326 - -
Arst8g03808 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
Arst8g03808 464 MobiDBLite consensus disorder prediction 76 92 - -
Arst8g03808 464 MobiDBLite consensus disorder prediction 184 206 - -
Arst8g03808 464 MobiDBLite consensus disorder prediction 76 102 - -
Arst8g03808 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 322 IPR036638 GO:0046983
Arst8g03808 464 Gene3D - 256 325 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03808 Arst-Chr8 48564452 48570171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03808 157 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 61.672 6.38e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst8g03808 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03808 - - ahf:112772589 742.265