Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03796 ATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGTTTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGACATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTTGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTCTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACTGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCATATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCTTTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCAGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCCGAATTTAATGCAGTAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTGCTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAACCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAATTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGCGGGGATGAATCTGCTAATGGAGTAGAGTCATCCTTGAGTTCATCGAAAACCTGA 2721 0.4311 MNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPTSSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPLGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHPRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAAISGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGAGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGGDESANGVESSLSSSKT 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03796 906 CDD RRM3_MEI2_like 735 820 IPR034454 -
Arst8g03796 906 Gene3D - 726 818 IPR012677 -
Arst8g03796 906 MobiDBLite consensus disorder prediction 1 22 - -
Arst8g03796 906 FunFam Protein MEI2-like 1 291 384 - -
Arst8g03796 906 MobiDBLite consensus disorder prediction 1 27 - -
Arst8g03796 906 PANTHER RNA RECOGNITION MOTIF-CONTAINING 59 897 - -
Arst8g03796 906 MobiDBLite consensus disorder prediction 865 906 - -
Arst8g03796 906 SUPERFAMILY RNA-binding domain, RBD 734 819 IPR035979 GO:0003676
Arst8g03796 906 CDD RRM1_MEI2_like 206 281 IPR034453 -
Arst8g03796 906 SUPERFAMILY RNA-binding domain, RBD 204 366 IPR035979 GO:0003676
Arst8g03796 906 Gene3D - 292 386 IPR012677 -
Arst8g03796 906 MobiDBLite consensus disorder prediction 843 906 - -
Arst8g03796 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 273 IPR000504 GO:0003723
Arst8g03796 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 359 IPR000504 GO:0003723
Arst8g03796 906 SMART rrm1_1 734 812 IPR000504 GO:0003723
Arst8g03796 906 SMART rrm1_1 208 276 IPR000504 GO:0003723
Arst8g03796 906 SMART rrm1_1 293 361 IPR000504 GO:0003723
Arst8g03796 906 Gene3D - 180 289 IPR012677 -
Arst8g03796 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 365 IPR000504 GO:0003723
Arst8g03796 906 Pfam RNA recognition motif 2 732 828 IPR007201 -
Arst8g03796 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03796 Arst-Chr8 48388626 48394088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03796 202 381 Eukaryotic Initiation Factors Gene Family AT3G16380 22.388 1.49e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03796 - - aip:107612925 1654.8