Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03721 ATGCCAACAACTAAGCTCTTCTTCTCCCAACTCCGTCTTCTCCATCTCCCTTCTCCTTCTTCTTCTTCTTCTCTCACAATGAAGCCACCATCTTCATTATTCCTCTCTCGTCCTTCTAGAACTTTCTTCCCTACCTTCCCTTTCAAATTCAAGTACCTCGCCCTCCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCCACGCGCCGCAAAGAAAGGCCTCGCCTTTCTTCTCCCTCCGCCACCCCAAAGAGCTTAATTGACGACGAGGCTGAGCTCAGTGACTGGGTCGACGAGATTAGAACCGCGCGAGTTGACTCGGACTTTGGTGAGTCAACTCGGAATCGTAGGCAAGTTCGCCGTGACACTAATTCGAACTCGTCGTTCTCGCGGAATTCGGGGTTTTCGCAGCGCAGATTCGGTCGCGAATTGGAGAAGGAAGACAATGGCGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAATTGAACAGAGGAAGTGGAGGGAAGAGTTTGAGCAGAAAACCTAAACCCCAATTGATGAGCGATGATGAAGATGATGAAGTGGTTGTGAGAAAGGGATTCAAGGGTTTTCTGAGTGAGGAAGAGGAAGAAGAAGAAGAAGAAAGTGGTGAGAGTGAGGATGATGAGATTGTGAGAAAGAGTAGAACTGCTTTGTTTGGTGGCACTAAACAACAACAACAACCGGCACCAGCAGCTCCAAGAGCTTCTTCACCTTCTGGAACTGATTCTTATTTGAGTGACACCAGGTTCGATCAATGTTCAATCTCCCCACTATCATTGAAAGGAGTCAAGGATGCTGGATATGAGAAGATGACTATTGTTCAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACTGGGAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCGCCAACTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGCTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGAGGGACGAGACTTGCCTTAGAACAGAAACGTATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCAGCAGTACCTAAACAACGACAAACACTCATGTTTTCTGCCACTATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCACTCACAGGTTCGCCAAGCACATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCGGATGATGTTGACTATAAGGTTCTTGTGTTCTGCACAACCGCCATGGTGACAAGACTTGTTGCCGAACTTCTTGGCGAGTTGAACCTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAAGAATTTCGCAAGTCAAAGGGACTTATCTTGGTTACATCCGATGTGTCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCCGCTGACAGAGAACAGTATATACATAGACTTGGTAGAACGGGACGTCGAGGGAAAGAAGGGCAGGGCATATTGCTTTTGGCTCCATGGGAAGAGTTCTTCTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTACCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCTCTATGCCATGTCGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAGATCGGGCGCGACAAGTATAGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCTATCCCCAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG 2178 0.4637 MPTTKLFFSQLRLLHLPSPSSSSSLTMKPPSSLFLSRPSRTFFPTFPFKFKYLALRNAPFRALSTRSDSTRRKERPRLSSPSATPKSLIDDEAELSDWVDEIRTARVDSDFGESTRNRRQVRRDTNSNSSFSRNSGFSQRRFGRELEKEDNGGFRTRKRRGVELNRGSGGKSLSRKPKPQLMSDDEDDEVVVRKGFKGFLSEEEEEEEEESGESEDDEIVRKSRTALFGGTKQQQQPAPAAPRASSPSGTDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTERDHRRPPIHVLVICPTRELASQAATEAAKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQAHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVPSVDPDTKKKVERALCHVEMKNKEAAYQAWLGYYNSNKKIGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03721 725 SMART ultradead3 276 489 IPR014001 -
Arst8g03721 725 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 257 285 IPR014014 GO:0003724
Arst8g03721 725 SMART helicmild6 529 610 IPR001650 -
Arst8g03721 725 MobiDBLite consensus disorder prediction 140 165 - -
Arst8g03721 725 MobiDBLite consensus disorder prediction 65 86 - -
Arst8g03721 725 MobiDBLite consensus disorder prediction 124 139 - -
Arst8g03721 725 CDD DEADc_MSS116 264 473 - -
Arst8g03721 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 471 IPR014001 -
Arst8g03721 725 MobiDBLite consensus disorder prediction 227 257 - -
Arst8g03721 725 CDD SF2_C_DEAD 486 619 - -
Arst8g03721 725 PANTHER RNA HELICASE 211 652 - -
Arst8g03721 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 652 IPR001650 -
Arst8g03721 725 Gene3D - 480 703 IPR027417 -
Arst8g03721 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 626 IPR027417 -
Arst8g03721 725 MobiDBLite consensus disorder prediction 111 257 - -
Arst8g03721 725 Gene3D - 202 472 IPR027417 -
Arst8g03721 725 Pfam DEAD/DEAH box helicase 283 459 IPR011545 GO:0003676|GO:0005524
Arst8g03721 725 MobiDBLite consensus disorder prediction 178 201 - -
Arst8g03721 725 Pfam Helicase conserved C-terminal domain 501 610 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03721 Arst-Chr8 47565061 47569981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03721 250 638 Eukaryotic Initiation Factors Gene Family AT3G19760 29.310 5.87e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03721 - - adu:107463398 1322.76