Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03562 ATGGCCTCTGATCATAACTTTCTAGACTTTTTTCTCGAGGAGATAGAGTTTGAGAATGAAAGAGAGAATGATCAGTTTTATTCTTATGATTACAACAATGAATTGTCAAAATCTGAGAGCCAGTTATGTGTACCTCTAGATCCGGTAGAAGATTTAGAATGGTTTCCGAATTTTCAAGACGATTTAATATCTTTAAAGAACTATGATGACTACCAATCATCACATCCCCAGAATTATTATTTTGTTGATGACAACTCGAATCAATTTCGCGAAAGCTTCGATCAACCGGCTACTCCTCACCAACAAAAGGAAACTAAGTCAAAGCATGAAGATACTGGCGTAAAAGACGATGAGAACGATGAGTATGTGTTGATGGATATGAACGGTCGTAGAAAAAGGAAAAAGTCCAGGACAACAATTAACAGGAAGCCAAGGAAAAATATGAAATTTGAGACTAAAAGATGTGCTCATTGCGAAGTAGAGGAAACTCCTCAATGGAGGAATGGACCCATGGGTCCGAAAACATTGTGCAATGCATGTGGTGTGCGCTACAAGTCTGGTAGGTTGTTACCGGAATATCGTCCCAAGGCAAGTCCATCTTTTGATAGCAGTAAACATTCCAATTATCATAAGAAGATAACAAGGAGGTTTCGTTAA 657 0.382 MASDHNFLDFFLEEIEFENERENDQFYSYDYNNELSKSESQLCVPLDPVEDLEWFPNFQDDLISLKNYDDYQSSHPQNYYFVDDNSNQFRESFDQPATPHQQKETKSKHEDTGVKDDENDEYVLMDMNGRRKRKKSRTTINRKPRKNMKFETKRCAHCEVEETPQWRNGPMGPKTLCNACGVRYKSGRLLPEYRPKASPSFDSSKHSNYHKKITRRFR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03562 218 Pfam GATA zinc finger 155 189 IPR000679 GO:0006355|GO:0043565
Arst8g03562 218 MobiDBLite consensus disorder prediction 90 119 - -
Arst8g03562 218 PANTHER GATA TRANSCRIPTION FACTOR 109 214 - -
Arst8g03562 218 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355|GO:0043565
Arst8g03562 218 MobiDBLite consensus disorder prediction 195 218 - -
Arst8g03562 218 FunFam GATA transcription factor 149 199 - -
Arst8g03562 218 MobiDBLite consensus disorder prediction 101 119 - -
Arst8g03562 218 CDD ZnF_GATA 154 205 IPR000679 GO:0006355|GO:0043565
Arst8g03562 218 Gene3D - 149 199 IPR013088 GO:0006355|GO:0008270
Arst8g03562 218 SMART GATA_3 149 199 IPR000679 GO:0006355|GO:0043565
Arst8g03562 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 211 - -
Arst8g03562 218 ProSiteProfiles GATA-type zinc finger domain profile. 149 185 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03562 Arst-Chr8 46244893 46245705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03562 18 213 C2C2-Gata Transcription Factor Family AT4G36240 39.706 1.18e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst8g03562 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03562 - - adu:107463157 447.588