Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03513 ATGGAGCTTCAATTAGGTTTGGATCTTCCAACTATTCATGATGATCATCATAATCATCATGATAGTATAGAGTGTTGTGAATTGTGGAGTAGAGGAATTGGTTTTAGTAGTAGTGAAAGTAACAAAAAGCATGTAAGAAAGAAGCGTAGCTTTGAAGATTATGCCTTTGGACAATGTTCTTTGAACAAGACTACTTTGCCTTTGCTAGTATGGAGTGGACACCCAAATGAGGAAGAAGAAGATGACTCTAATAATGGAAACATTCATAGAAGGAATATTCACTTATCAAACAAGAATGAAGGGGAGGAAAATCATTTGGTGGGGTGGCCACCAATTAAGTCATGGAGGAAGAAAGAACTAAATCATCATCATCAATATCCTACAATAATAAGGAACCATAATAGGATGATGCAAGCAACAAATCATGAGAATCAAAATAGAAGAGAAGAGACAAACTCTTTTTATGTTAAGGTTAATATGGAAGGGGTAACAGTAGGAAGGAAGATTGATTTGATGCTTTACAATTCTTACCAGACTCTTACACACACTTTGATTACTATGTTTGCTAAATACCAAGATTTTGAGGAAGATGGAGCAAGTTATAAACTCACCTTTCAGAATGAACAAGGAGATTGGTTGCTTGCTGGACATGTTCCATGGCAATCATTCATTGGTACCGTGCGGCGTTTGGCGATATTAAGGAATGAAAAATGA 714 0.3613 MELQLGLDLPTIHDDHHNHHDSIECCELWSRGIGFSSSESNKKHVRKKRSFEDYAFGQCSLNKTTLPLLVWSGHPNEEEEDDSNNGNIHRRNIHLSNKNEGEENHLVGWPPIKSWRKKELNHHHQYPTIIRNHNRMMQATNHENQNRREETNSFYVKVNMEGVTVGRKIDLMLYNSYQTLTHTLITMFAKYQDFEEDGASYKLTFQNEQGDWLLAGHVPWQSFIGTVRRLAILRNEK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03513 237 Pfam AUX/IAA family 31 191 IPR033389 -
Arst8g03513 237 Pfam AUX/IAA family 197 235 IPR033389 -
Arst8g03513 237 Gene3D - 147 237 - -
Arst8g03513 237 ProSiteProfiles PB1 domain profile. 153 237 IPR000270 GO:0005515
Arst8g03513 237 SUPERFAMILY CAD & PB1 domains 143 231 - -
Arst8g03513 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 236 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03513 Arst-Chr8 45816270 45818461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03513 77 237 B3 DNA Binding Superfamily AT5G62000 25.143 2.51e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst8g03513 AUX_IAA 1.1e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03513 K14484 - aip:107611938 453.751