Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03411 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTGTATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGACACAACTAATGAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAACAACCACAACAACAGCAGCCCCCACAACCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCCGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGTGGCGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGCGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATCCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCAGATGGTAGCATGTCGAACTCATTTAGAGGAAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCTGGAGATGTGATATCTATGCCATCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCTGTTCTTGAAGAGCATTCGTCTATGATCACCGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGATATTCATTAAAGGGCCATACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCCGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTCCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGGCAAGTCTACCTTATATGTTTCCTTGTCCAATTTCTTTCCCTTTGATAGTGGTGAATTTAGCTGTCATGATCTTTCCATACACAATAAAAACCGAGGTTTGTTCGAGAATCATGCTTGGTAAGAAAGGGTTGCAATGA 2595 0.4655 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKAREQQQQQPQQPQQQQQQQQQQQQQPQQPQQQQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNPGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNPQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQASLPYMFPCPISFPLIVVNLAVMIFPYTIKTEVCSRIMLGKKGLQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03411 864 ProSitePatterns Trp-Asp (WD) repeats signature. 643 657 IPR019775 -
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 624 659 IPR001680 GO:0005515
Arst8g03411 864 MobiDBLite consensus disorder prediction 130 156 - -
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 709 IPR001680 GO:0005515
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 623 IPR001680 GO:0005515
Arst8g03411 864 Gene3D - 717 822 IPR015943 GO:0005515
Arst8g03411 864 Pfam WD domain, G-beta repeat 622 656 IPR001680 GO:0005515
Arst8g03411 864 Pfam WD domain, G-beta repeat 745 779 IPR001680 GO:0005515
Arst8g03411 864 Pfam WD domain, G-beta repeat 663 700 IPR001680 GO:0005515
Arst8g03411 864 Pfam WD domain, G-beta repeat 584 613 IPR001680 GO:0005515
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 705 - -
Arst8g03411 864 SUPERFAMILY WD40 repeat-like 580 818 IPR036322 GO:0005515
Arst8g03411 864 MobiDBLite consensus disorder prediction 115 129 - -
Arst8g03411 864 CDD WD40 582 817 - -
Arst8g03411 864 MobiDBLite consensus disorder prediction 88 156 - -
Arst8g03411 864 MobiDBLite consensus disorder prediction 388 514 - -
Arst8g03411 864 MobiDBLite consensus disorder prediction 388 427 - -
Arst8g03411 864 Pfam LisH 10 36 IPR006594 GO:0005515
Arst8g03411 864 FunFam Transcriptional corepressor LEUNIG 561 715 - -
Arst8g03411 864 SMART Lish 8 40 IPR006594 GO:0005515
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 789 IPR001680 GO:0005515
Arst8g03411 864 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 624 659 - -
Arst8g03411 864 Gene3D - 558 716 IPR015943 GO:0005515
Arst8g03411 864 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 823 - -
Arst8g03411 864 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 823 - -
Arst8g03411 864 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Arst8g03411 864 MobiDBLite consensus disorder prediction 438 514 - -
Arst8g03411 864 SMART WD40_4 786 827 IPR001680 GO:0005515
Arst8g03411 864 SMART WD40_4 660 700 IPR001680 GO:0005515
Arst8g03411 864 SMART WD40_4 703 739 IPR001680 GO:0005515
Arst8g03411 864 SMART WD40_4 617 656 IPR001680 GO:0005515
Arst8g03411 864 SMART WD40_4 742 780 IPR001680 GO:0005515
Arst8g03411 864 SMART WD40_4 575 614 IPR001680 GO:0005515
Arst8g03411 864 MobiDBLite consensus disorder prediction 88 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03411 Arst-Chr8 44951253 44958493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03411 627 824 Miscellaneous Gene Families AT5G08390 27.451 6.74e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst8g03411 WD40 0.00013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03411 - - gmx:100805628 1252.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g03411 8 44951253 44958493 Arst8g03411 8 44951253 44958493 ECH
Arst6g03615 6 103973168 103983114 Arst8g03411 8 44951253 44958493 PCT