Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g03411 | ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTGTATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGACACAACTAATGAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAACAACCACAACAACAGCAGCCCCCACAACCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCCGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGTGGCGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGCGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATCCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCAGATGGTAGCATGTCGAACTCATTTAGAGGAAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCTGGAGATGTGATATCTATGCCATCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCTGTTCTTGAAGAGCATTCGTCTATGATCACCGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGATATTCATTAAAGGGCCATACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCCGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTCCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGGCAAGTCTACCTTATATGTTTCCTTGTCCAATTTCTTTCCCTTTGATAGTGGTGAATTTAGCTGTCATGATCTTTCCATACACAATAAAAACCGAGGTTTGTTCGAGAATCATGCTTGGTAAGAAAGGGTTGCAATGA | 2595 | 0.4655 | MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKAREQQQQQPQQPQQQQQQQQQQQQQPQQPQQQQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNPGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNPQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQASLPYMFPCPISFPLIVVNLAVMIFPYTIKTEVCSRIMLGKKGLQ | 864 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g03411 | 864 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 643 | 657 | IPR019775 | - | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 624 | 659 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 130 | 156 | - | - | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 667 | 709 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 582 | 623 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | Gene3D | - | 717 | 822 | IPR015943 | GO:0005515 | |
Arst8g03411 | 864 | Pfam | WD domain, G-beta repeat | 622 | 656 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | Pfam | WD domain, G-beta repeat | 745 | 779 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | Pfam | WD domain, G-beta repeat | 663 | 700 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | Pfam | WD domain, G-beta repeat | 584 | 613 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 667 | 705 | - | - | |
Arst8g03411 | 864 | SUPERFAMILY | WD40 repeat-like | 580 | 818 | IPR036322 | GO:0005515 | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
Arst8g03411 | 864 | CDD | WD40 | 582 | 817 | - | - | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 88 | 156 | - | - | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 388 | 514 | - | - | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 388 | 427 | - | - | |
Arst8g03411 | 864 | Pfam | LisH | 10 | 36 | IPR006594 | GO:0005515 | |
Arst8g03411 | 864 | FunFam | Transcriptional corepressor LEUNIG | 561 | 715 | - | - | |
Arst8g03411 | 864 | SMART | Lish | 8 | 40 | IPR006594 | GO:0005515 | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 749 | 789 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 624 | 659 | - | - | |
Arst8g03411 | 864 | Gene3D | - | 558 | 716 | IPR015943 | GO:0005515 | |
Arst8g03411 | 864 | PANTHER | TRANSCRIPTION ACTIVATOR MSS11 | 2 | 823 | - | - | |
Arst8g03411 | 864 | PANTHER | TRANSCRIPTION ACTIVATOR MSS11 | 2 | 823 | - | - | |
Arst8g03411 | 864 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 8 | 40 | IPR006594 | GO:0005515 | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 438 | 514 | - | - | |
Arst8g03411 | 864 | SMART | WD40_4 | 786 | 827 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | SMART | WD40_4 | 660 | 700 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | SMART | WD40_4 | 703 | 739 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | SMART | WD40_4 | 617 | 656 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | SMART | WD40_4 | 742 | 780 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | SMART | WD40_4 | 575 | 614 | IPR001680 | GO:0005515 | |
Arst8g03411 | 864 | MobiDBLite | consensus disorder prediction | 88 | 114 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g03411 | Arst-Chr8 | 44951253 | 44958493 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g03411 | 627 | 824 | Miscellaneous Gene Families | AT5G08390 | 27.451 | 6.74e-17 | 83.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | LUG | Arst8g03411 | WD40 | 0.00013 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g03411 | - | - | gmx:100805628 | 1252.65 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst8g03411 | 8 | 44951253 | 44958493 | Arst8g03411 | 8 | 44951253 | 44958493 | ECH | |
Arst6g03615 | 6 | 103973168 | 103983114 | Arst8g03411 | 8 | 44951253 | 44958493 | PCT |