Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03378 ATGCACGCGCACTCGTCGATTCGGGATCGCACGCACGAATTCCATACCATCGCCGAGAGGTTGAAGAAATCTTCTTCCTCAAACGGACCCACAACCACTTCCTCTTCATCTGCTGCTTCTTCTTCTTCCAGATCGGATGAACAGCGATCCGCAATCGCAATTCAGTCCGAGTTCAATCGAAGGGCTTCCAAGATTGGCTATGGGATCCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTTGATGACCCTACAATGGAAATCCAAGAGCTTACGAGTGTAATCAAGCAAGACATTACTGCGTTGAACTCTGCAGTTGTGGATCTTCAGTTGCTATGCAACTCGAGGAATGAGAGCGGGAACGTTTCTGCCGACACTACCAGCCATTCAACTACGGTTGTAGATGACCTCAAGACCCGTTTGATGAGCACCACCAAGGAGTTCAAAGAAGTTCTCACCATGAGAACCGAGAACTTGAAAGTACATGAGAATAGGAGACAATTGTTTTCGGCCTCTGGTTCTAAGGATGCTGCTAATCCTTTTGTCCGTCAACGGCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTAATGCCCCCGCACCTCCATGGGCTAGTGGGTCTTCATCTTCATCTGAGTTGTTTCCTAAGAAGCAGGCAGATGGGGAGAGTCAGCCATTGCTACAGCAACAGCAACAACAACAGCAGCAGATGGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCATAATGTTGAATCCACCATTCATGAACTCAGCAATATTTTTAATCAATTAGCAACTCTCGTTTCCCAACAAGGAGAGCTTGCTATCAGAATTGATGAGAACATGGACGATACATTGGCAAACGTAGAAGGTGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTCATGGTTTTCTTATTTTTTGTGGCATAG 1029 0.4606 MHAHSSIRDRTHEFHTIAERLKKSSSSNGPTTTSSSSAASSSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASGSKDAANPFVRQRPLATRTAASASNAPAPPWASGSSSSSELFPKKQADGESQPLLQQQQQQQQQMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03378 342 Pfam SNARE domain 287 338 IPR000727 -
Arst8g03378 342 MobiDBLite consensus disorder prediction 19 49 - -
Arst8g03378 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Arst8g03378 342 PANTHER SYNTAXIN 52 334 IPR045242 -
Arst8g03378 342 CDD SNARE_syntaxin5 253 331 - -
Arst8g03378 342 SMART tSNARE_6 245 312 IPR000727 -
Arst8g03378 342 Gene3D - 53 305 - -
Arst8g03378 342 MobiDBLite consensus disorder prediction 197 248 - -
Arst8g03378 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 23 IPR021538 -
Arst8g03378 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Arst8g03378 342 SUPERFAMILY t-snare proteins 56 305 IPR010989 GO:0016020|GO:0016192
Arst8g03378 342 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03378 Arst-Chr8 44689998 44694491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03378 2 342 SNARE and Associated Proteins AT3G24350 64.365 1.24e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03378 K08490 - gmx:100777961 457.218