Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03349 ATGAAGAGGTCTCCTAATTCCTCTTCTTCATCTTCATCATCTTCTGTTGGTGTTGGTTTTGAATTAAAGATTAATAATAACGATAAGTATCCAAGAAGCAAAAATAGCAGTAATAATGTGAAGTTATCACAGAAAAAAGTATTGAAGAAAACAAATAGCTATGACAATAGCAGTGTCAACAAAAGAAGCTCCATTTACAGAGGAGTCACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCATCTGTGGGACAAGAATTCTTGGAATAATATTCAGAGTAAGAAGGGACGACAAGGGGCATACAATACAGAAGAAGCTGCTGCTCGCTCCTATGATCTTGCTGCTCTAAAGTATTGGGGACCTAATACAATCTTAAATTTTCCGATGGAAACATATGCCAAGGAAATTGAGGAAATGAAGGATGTTTCACAGACTGAATACTTGGCTTCTCTGCGAAGAAGGAGCAGTGGATTTTCAAGAGGTGTTTCCAAGTATCGTGGAGTGGCTAGGCATCACCACAATGGAAGGTGGGAAGCACGAATTGGAAGAGTAAACGGCAACAAGTACCTTTATCTGGGGACCTATAACACTCAAGAAGAGGCGGCAGCAGCATATGATAGAGCAGCTATCGAGTACAGAGGAATAAATGCAGTAACAAATTTTGATATAAGCAATTATATTGACAAAATAAAGAAGAATGAGCCGTCTATGAAAGAAGCACAAACACATATAACTCCAATCTCTACTGAATCTAAAGAAGCACAAGTAGTGGAGCAGGAGGCTCCTTCCACAGTAGTGGCAGATCCAGCAAATTTAGGTAACCAGAAAAAAGAAAATATGCAGAAGAAAAAAGAGCAGCCAAACACAGATATCGATGGCATACTTTCTCGGGATCTGAGATGGAGCTTCATGGATGCCGAATTATCCGAGTTCAACATGAATGATATTTTTCAAGGTGAAGGTAGTGGGTTGGAGGATGACATCAACCTTATGTGTATGGCTGATCCTGATGAGAGTAGTTTCAATCTGAACACTATCTTTGATGATCCTGGAAAATGTGGTGGAGATATGCATGTCTATGCCAATTATTAA 1092 0.3974 MKRSPNSSSSSSSSSVGVGFELKINNNDKYPRSKNSSNNVKLSQKKVLKKTNSYDNSSVNKRSSIYRGVTRHRWTGRFEAHLWDKNSWNNIQSKKGRQGAYNTEEAAARSYDLAALKYWGPNTILNFPMETYAKEIEEMKDVSQTEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVNGNKYLYLGTYNTQEEAAAAYDRAAIEYRGINAVTNFDISNYIDKIKKNEPSMKEAQTHITPISTESKEAQVVEQEAPSTVVADPANLGNQKKENMQKKKEQPNTDIDGILSRDLRWSFMDAELSEFNMNDIFQGEGSGLEDDINLMCMADPDESSFNLNTIFDDPGKCGGDMHVYANY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03349 363 CDD AP2 64 128 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 SMART rav1_2 65 134 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 MobiDBLite consensus disorder prediction 29 55 - -
Arst8g03349 363 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677
Arst8g03349 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 274 - -
Arst8g03349 363 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 MobiDBLite consensus disorder prediction 269 288 - -
Arst8g03349 363 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Arst8g03349 363 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Arst8g03349 363 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 Pfam AP2 domain 65 120 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 MobiDBLite consensus disorder prediction 25 55 - -
Arst8g03349 363 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
Arst8g03349 363 Gene3D AP2/ERF domain 65 130 IPR036955 GO:0003700|GO:0006355
Arst8g03349 363 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Arst8g03349 363 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03349 Arst-Chr8 44399890 44409647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03349 158 232 AP2-EREBP Transcription Factor Family AT5G57390 39.759 2.50e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Arst8g03349 AP2 6.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03349 - - aip:107641803 593.964