Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03238 ATGAGTGTTGTGTATAGTCATGCTTTAAAATACTCCCAAGAAATGGATTCAAACAACATTAATTCTGGATTATTAAGGTACCGTTCTGCTCCAAGCTCAATCCTCACAAGCCTTATGGATAACATCCACCACGGCGGCGGCGGTGGCGGCAACGAAGAAGCCTTGAGAACTGAATTGGAAAAGTTGATCTCATCCAACAACAAAAGCAAACATGTTAACAATTCTTCAGAGCATTTGAAGAGAGAAGAAGGCAACAACAATTATAATTACTCTTTTGGGTCTCAGAATCATGTTATTTACCAAAACAACCAGCACTACCATCAAATTCATCAAGGGTTGGCAATGGCATCATCATGTAATAATGGTTTTGATGGAACATTTTTTGGTGCAACGAACTCAGTGGATTCAGAGAATAATAATGATAATGGCACACAACATAAAATGGGTTCCAATCTCATTAGGCAAAAGAGTTCTCCAGCTGGTTTTTTCTCCAATTATTCAATTGATAATAATGGTACAACAACATCATCAAGAAGTAACAGTGGATTGCAATGCACTTTGAACTTCTCATCAAGATCATCTTCTTGCTCCAAAAGCCGCATGCCACAAATTGTTGAGAGTGGAAATGAAGGCATGGAATCAAATTGTGTTGAAAATAGAAACCTAATAATAAGGAGTGATGATAGTAATAATAATAATAATAATAATGGCAGTACTAAGTGTTATATGCCAAGATTCACTGGTGACGTTTGGGATGCTTCTGAATTCAATTCCTCCAAAAGGGGCACTAACAATGGTGAAATCATGTTTTCCACTTCAAATGCTATGGAAGCTCAGGATGTAGATTTTGGATATCAAAAGGTTGGTTTGACCCACCATTTAAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAGCTTTTTCAAATTCAAGGATCTGCTCCATGTAAGATTAGAGCCAAGAGAGGATTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCAAGAATCAAGAAACTACAAGACCTTTTCCCAAAATCGGACAAGCAAACAAGTACTGCAGATATGTTGGATTTGGCAGTTGATTATATCAAAGGCCTTCAAAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAACTGTTCAAGTAATTATCAGAAAGAACAATGA 1203 0.3766 MSVVYSHALKYSQEMDSNNINSGLLRYRSAPSSILTSLMDNIHHGGGGGGNEEALRTELEKLISSNNKSKHVNNSSEHLKREEGNNNYNYSFGSQNHVIYQNNQHYHQIHQGLAMASSCNNGFDGTFFGATNSVDSENNNDNGTQHKMGSNLIRQKSSPAGFFSNYSIDNNGTTTSSRSNSGLQCTLNFSSRSSSCSKSRMPQIVESGNEGMESNCVENRNLIIRSDDSNNNNNNNGSTKCYMPRFTGDVWDASEFNSSKRGTNNGEIMFSTSNAMEAQDVDFGYQKVGLTHHLSLPSSSTKIGGMEKLFQIQGSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVDYIKGLQKQVKILTDTRAKCNCSSNYQKEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03238 400 Gene3D - 328 398 IPR036638 GO:0046983
Arst8g03238 400 SMART finulus 332 382 IPR011598 GO:0046983
Arst8g03238 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 392 IPR036638 GO:0046983
Arst8g03238 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 376 IPR011598 GO:0046983
Arst8g03238 400 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Arst8g03238 400 FunFam Transcription factor bHLH130 family 327 396 - -
Arst8g03238 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03238 Arst-Chr8 43604184 43607780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03238 16 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.013 1.12e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst8g03238 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03238 - - gmx:100795896 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g03238 8 43604184 43607780 Arst8g03238 8 43604184 43607780 ECH