LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g03224	ATGGCCACCGCCAAAAGCAACAGATTTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCTGTGTTGCTTCTCCCATGAGAGAAATGAGGCTTCTTCAGATGTACGTGACGAATTTACAATTCTTGTATCTTCAGATATTTGCTTGTTCTATCAGAAGGGCTACTGTGCTTATGGCAGTCAATGCAGGAATAGGCATGTCAAACCATCACAGGCATCAGCATCAGCTTCAGCAAATGGACCTGTATCTTTGGTTTCACAATCTGCCATGATTCATAGTGCTGCTAAGGGAAAGTTTACTTGGGTTCGGAAGGCGGATACGAAAGTGTTGTCACCAACTGACAAACACACTAGTAGCTTACAACACAAGAATCAACATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCGAGCGCTCCTGCTATGCTGGATGAGAATTTGTTCTGTGAATTTGATGCGGCCAACTGCACCTCAAGGGATAAGTGTACCAAAATTCATGGAATCCTCTGCTTGTACTGCAGAAAGCCTTGTCTGCATCCAACCAATCTGGAACAAAGGTCGAACCACATGAAGATATGCAAGGAAAAGGCTGAGATAATGAAGAATAGTCAAGATATAGAATGCAGTGTTTGCCTGGAGCGCGTTCTGCGGAAGCCTAGACCATCTCAGCGCAAGTTTGGTTTGCTATCTGAATGTGACCATCCTTTCTGTTTAGACTGCATCATCAGGTGGCGCAATATGGCCCCAACCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCATCTTTTTATGTTCAAAGTGACATTTGGTATGCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTACAAGGCGAACTGCAAGTTGATTGATTGCAAGTATTTTAAATTTGGAACCAGGCAGTGCCCTCATGGAACTAGTTGTATGTATAAGCATGCTGTAAAACCTGTCTTGCGCAAACAGAGGCAAACCAGGCCACAACCTCAAATTGGAGGAGACAATCTCAACAAATATGACATCATGTCTCAGCTCAGTGAATTTGATTTGCATCCTCATGAGTTTTATTCCATCTTGAAAGACATGGAGTGGTTCGATGATATGAGTGCAATGGAGAAGATGGCTTTAGCTGATGAACTGGCTGGTCCTACTTACGGAGATTCACATTTCTTTCCCCAGGATGATTTCTTTGATAGTGATGATGATTTTGATGATGAAGATTTCGATCCTATTGATGCTGCAATATCATCAATGATGATGTCTGGTATGCCAGTATTTGGATTCAGTGATGACGAATACAGCAACAATGAAGCCAGGGATGGCAAAGACAGTGATGGCGAATCCATTGATGATGATTGA	1368	0.4284	MATAKSNRFCKFYARGTCLKGELCCFSHERNEASSDVRDEFTILVSSDICLFYQKGYCAYGSQCRNRHVKPSQASASASANGPVSLVSQSAMIHSAAKGKFTWVRKADTKVLSPTDKHTSSLQHKNQHSQGTHCEVGESSAPAMLDENLFCEFDAANCTSRDKCTKIHGILCLYCRKPCLHPTNLEQRSNHMKICKEKAEIMKNSQDIECSVCLERVLRKPRPSQRKFGLLSECDHPFCLDCIIRWRNMAPTNAMDCPVCRKHSSFYVQSDIWYATKEEKQAIIDNYKANCKLIDCKYFKFGTRQCPHGTSCMYKHAVKPVLRKQRQTRPQPQIGGDNLNKYDIMSQLSEFDLHPHEFYSILKDMEWFDDMSAMEKMALADELAGPTYGDSHFFPQDDFFDSDDDFDDEDFDPIDAAISSMMMSGMPVFGFSDDEYSNNEARDGKDSDGESIDDD	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g03224	455	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	194	280	IPR013083	-
	Arst8g03224	455	Gene3D	-	2	86	-	-
	Arst8g03224	455	ProSiteProfiles	Zinc finger C3H1-type profile.	44	71	IPR000571	GO:0046872
	Arst8g03224	455	ProSiteProfiles	Zinc finger C3H1-type profile.	290	319	IPR000571	GO:0046872
	Arst8g03224	455	SUPERFAMILY	RING/U-box	203	267	-	-
	Arst8g03224	455	Pfam	Zinc finger, C3HC4 type (RING finger)	210	260	IPR018957	GO:0046872
	Arst8g03224	455	SUPERFAMILY	CCCH zinc finger	5	29	IPR036855	GO:0046872
	Arst8g03224	455	MobiDBLite	consensus disorder prediction	432	455	-	-
	Arst8g03224	455	ProSitePatterns	Zinc finger RING-type signature.	234	243	IPR017907	-
	Arst8g03224	455	ProSiteProfiles	Zinc finger RING-type profile.	210	261	IPR001841	-
	Arst8g03224	455	PANTHER	MAKORIN-RELATED	10	333	IPR045072	GO:0000209\|GO:0061630
	Arst8g03224	455	MobiDBLite	consensus disorder prediction	114	134	-	-
	Arst8g03224	455	ProSiteProfiles	Zinc finger C3H1-type profile.	4	31	IPR000571	GO:0046872
	Arst8g03224	455	SMART	ring_2	210	260	IPR001841	-
	Arst8g03224	455	SMART	c3hfinal6	290	318	IPR000571	GO:0046872
	Arst8g03224	455	SMART	c3hfinal6	46	70	IPR000571	GO:0046872
	Arst8g03224	455	SMART	c3hfinal6	6	30	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g03224	Arst-Chr8	43455905	43459622	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Arst8g03224		zf-C3HC4	8.1e-07	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g03224	K15687		-	gmx:100788886	390.193