Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03220 ATGACAGATCCTCAATCCAATTCCTTAGATGATGATGGATTCTTCAACTTCATGCCTCTCCACCCTCCTCACCACTCTTCTTCATCTTCTTCTCAATCCAATTTGCACCCATTTGCATACTTAAACACAAGATTTCATCATCAACAACAACAATCTGAAGCTTCTTCATCTTCCTCCGAATATCTTCTTCCTACAAATTCTAATTCCCCTCCTCTTAAAGAAGCACTTCCTCTCATAAACAAACTAAGCCTCACAAATCACCAACAAAACAACCACAAGGGTGCACTCCCATATCCAGATTCTATTAATTACGAGAACGAAGACGAAGACGAAGAAGAGGATAATGAAACTGTGGCTGTTGCACTGCGCATAGGGCTTCCAAGAATCGATACTTCTTATGATCTTCAACCTTCAACAAAGGAAGCTATGGCTGATGAGAAACAGCAACAAGAACAAGTGAATAATAATAATGTGTTTTCTGGAAACCCTTTTGAGAGATTCAACAATAACAACAACAACAACATCAACAATAATAAGAGTCACTATTGGATTCCCACACCATCTCAGATTCTAATTGGACCTACACAGTTCTCATGCCCTCTTTGCTCCAAGACCTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAAGGGACCTGATTCTCTAAAAGGAACACAGCCAACAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGAACAAGGTTGCAAGCACAACATTGACCACCCAAGGGCAAGGCCCTTGAAGGATTTTAGAACCCTCCAAACACATTACAAGAGGAAGCATGGCATCAAACCCTACTTGTGCCGGAAGTGCCGGAAGTCCTTCGCCGTCAAAGGCGACTGGCGGACGCATGAGAAGAACTGCGGCAAGGTTTGGTATTGTTTGTGTGGATCTGATTTCAAGCACAAGAGGTCACTTAAGGATCATATTAGAGCCTTTGGAGATGGACATGGAGCCTTTGGGATTCAGAGCTTGCATGAATTTGAAGATGAAGCTCCCTCAGAAGCTGAACATGATGGGGAGAGTAGTTCTTTGTGA 1083 0.4238 MTDPQSNSLDDDGFFNFMPLHPPHHSSSSSSQSNLHPFAYLNTRFHHQQQQSEASSSSSEYLLPTNSNSPPLKEALPLINKLSLTNHQQNNHKGALPYPDSINYENEDEDEEEDNETVAVALRIGLPRIDTSYDLQPSTKEAMADEKQQQEQVNNNNVFSGNPFERFNNNNNNNINNNKSHYWIPTPSQILIGPTQFSCPLCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCEQGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYLCRKCRKSFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIRAFGDGHGAFGIQSLHEFEDEAPSEAEHDGESSSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03220 360 SUPERFAMILY beta-beta-alpha zinc fingers 190 219 IPR036236 -
Arst8g03220 360 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Arst8g03220 360 FunFam Zinc finger protein WIP2 250 332 - -
Arst8g03220 360 PANTHER ZINC FINGER PROTEIN WIP2 44 351 IPR043584 GO:0003700|GO:0010468
Arst8g03220 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Arst8g03220 360 MobiDBLite consensus disorder prediction 1 73 - -
Arst8g03220 360 MobiDBLite consensus disorder prediction 22 73 - -
Arst8g03220 360 FunFam zinc finger protein WIP2-like 196 219 - -
Arst8g03220 360 SUPERFAMILY beta-beta-alpha zinc fingers 265 301 IPR036236 -
Arst8g03220 360 Gene3D Classic Zinc Finger 279 328 - -
Arst8g03220 360 MobiDBLite consensus disorder prediction 88 114 - -
Arst8g03220 360 Gene3D Classic Zinc Finger 196 219 - -
Arst8g03220 360 SMART c2h2final6 197 219 IPR013087 -
Arst8g03220 360 SMART c2h2final6 244 276 IPR013087 -
Arst8g03220 360 SMART c2h2final6 281 301 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03220 Arst-Chr8 43396134 43401767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03220 65 352 C2H2 Transcription Factor Family AT1G51220 57.877 1.31e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g03220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03220 - - gmx:100794446 425.631