Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03199 ATGCCAGGAAAACCCGAATCAGACGAGTGGCGGGCGAAGCGAAGCCAGCAGATTCAGTTTCAAGCTTCCATTTATGCTCAGCCCTGGTGGCGCGGCGGAGCTGGTGAGAATTCCCCAAAATCATCATCAGTAGATCAGCAGTTGAATGGTTCATCAGCCATGAATGGTGGCACAATCACAACACAATCAGAGACTAATGAAGTTGTTGGTTTCAATAAACAGATGCAGTCGTTGATTTCTCAATCACTACCTGGAATTGATAACTCAGGTGAAGATGTTACCAAAGAGCACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGTAAAACACCTTGGTCCGAATTCCGAGAATGAAAGCATTGGTCATTCAATTGTTTTAACTTCGCAAGCTTATTTTGATGCACATTATGGTGGAGGCTTGACACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCGGTTTATGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCATGAGTCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTTAATACAAAGAAGCTTGAAGGCAACAACAACAACAGTATAAACCCCTCAATGGAATCCGGAAGCTCCCTTTCCACGGCTACTTTACATTCCAACAATGATCACTATGTTGTGTCGCAGTCCATGGTTCACGACATGGAGAAAATGCAGAATTTCACCATTGGTTTCCATGGTAGCAATGGTCTGTCCTCAATGTACCATTCACAGTTTAATGGAAGAAATGAGGGACATTGCTTTGGTGGAGAAAGGCAAGGCATGCTTATGCATGGAGCCCCAAATGGGGCTATTGAATGA 981 0.4414 MPGKPESDEWRAKRSQQIQFQASIYAQPWWRGGAGENSPKSSSVDQQLNGSSAMNGGTITTQSETNEVVGFNKQMQSLISQSLPGIDNSGEDVTKEHQNIKHAFSSTPFTMVKHLGPNSENESIGHSIVLTSQAYFDAHYGGGLTPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNNSINPSMESGSSLSTATLHSNNDHYVVSQSMVHDMEKMQNFTIGFHGSNGLSSMYHSQFNGRNEGHCFGGERQGMLMHGAPNGAIE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03199 326 MobiDBLite consensus disorder prediction 36 59 - -
Arst8g03199 326 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Arst8g03199 326 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Arst8g03199 326 MobiDBLite consensus disorder prediction 30 59 - -
Arst8g03199 326 MobiDBLite consensus disorder prediction 227 254 - -
Arst8g03199 326 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Arst8g03199 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 280 IPR001289 GO:0003700|GO:0006355
Arst8g03199 326 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Arst8g03199 326 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Arst8g03199 326 MobiDBLite consensus disorder prediction 232 254 - -
Arst8g03199 326 Gene3D - 172 233 - -
Arst8g03199 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03199 Arst-Chr8 43160102 43165988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03199 21 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.351 1.98e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst8g03199 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03199 K08064 - gmx:100782085 363.229