Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03176 ATGGGGAAGAAAAGTAAACTGAAGGAACATAGTGGCAAAGAACATTGTTCCTCGACTCTTTTTGTATCCAACCTGCCATACTCTTTTTCCAACTCCCAGCTTGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACTCAGAAGGGGTCAACCCAACATCGTGGCTTTGGTTATGTTCAATTTGCTGTCGAGGAAGATGCTAACCGTGCTATTGAACTGAAGAATGGTTCATCTGTTGGCGGCCGGAAAATTGCAGTGAAGCATGCAATGCCACGTCCTCCCCGTGAAGAACGACAATCGAAACCAATTCAAGTTGGTAAGACAGAAGATGACCCAAAGTCAAAAAATGATGATAAAGACAGCAAAGATTCTGGAGAAGAAAAAGCTGTTTCAATTTCAAAGGCAGAAGAGGTACAAGTTTCAAATAAACAAAGAAGCTCAAAGAGGCCCATGGAAATGAGAAAAGCAACTCTTTGTAGTGATATAGCAGATGATGGAGGTGGCTCAGAAAAGCAGAGGGTCGCCAGAACTGTTATATTTGGTAGTCTCATAAATTCCGATATGGCTGAAGATGTTCACCGTCAAGCCAAAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTCCAAGGAAAGATATTGAACTGCAAGGTCTCCTGCAAGATGGCTGTGCTTTGGATGCTTCAGCTGTTCTCTTTACAAGTGTAAAGTCAGCTCGAGCTGCTGTTATGGCATTACATAAAAAGGAGATCAAAGGGGGAACTGTTTGGGCACGGCAACTGGGTGGAGAGGGTTCCAAGACTCAGAAATGGAAGCTTATCATCAGAAACCTTCCTTTCAAGGCTGGTGAAAAGGAAATAAGGGATGTGTTTTCCTCTGCAGGGTATGTGTGGGACGTATTTATTCCACACAAGTCAGATACAGGGCTATCCAAGGGTTTTGGATTTGTGAAATTCACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGTTTAATGGATCCAAATTTGCAAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATTCAAATGCCACTGAAAAAGAACAAGAGACAAAAGATGGAGATAGTAGTGCCACTGATGACGATGTTGAGCACATTGGTGATGATAACTCTAGTGATGACGATGATAGTGATGAAGAAAACCCTAGTCCCATGGAGAAGGAAGGTGTTCCTCCTGAAGTTGATTTTGATATGGAAGTAGACATGACTAGAAAGGTTCTTAACAACTTGATTGCATCCTCCACAAAAAGAGCATCAGCGCAGAATGATTCTATGTTGCCCAAAGAAAATGAAGAGCCAGAATCAGAGTCAGACGAAGATGTAGATAATAAAGGAAATAATGAGTCCGAAAAAGTTTCAGGTGTTTCTAATCCTGAAATTTCCAACATAAGCAATTTATCAAATCCTAAGCAAACAGAAGATGTTGATTTGCAGCGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGATAATGAGGAAGTGAAGGAACGGTTCTCTGGATTTGGGGAAGTAGAATACTTTGTTCCAGTTTTACACCAAGTCACCAAACGTCCAAGAGGAACTGGTTTTCTTAAGTTTAAAACCACAGAAGCAGCTAATGATGCAATTAAAGCATCAAATGCTGCTTCAGGTATTCTGCTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTCTGGATAAGAAATCAGCCCATAGCAAGGAACTCGAGAAGGCAAAGAATGAGGTTAATGATCATCGCAATCTTTACCTGGCAAAGGAAGGACTCATCCTGGAGGGAACTCCAGCAGCTGAAGGGGTTTCGGCCAGTGATATGTTAAAACGCCAACAGTTAGAAAAGAAAAAGAAGACAAAGCTTCAGTCACCAAATTTTCATGTTTCAAGAACAAGACTTATCATCTACAATGTACCGAAGTCAATGTCTGAAAAAGAACTAAAGAAAGTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGGCAGATAAAGTTCTTGAAAGATGCTAAGAAAGGAGGAAAGGTTGTCCATGAACATTTTTCACGTGGAGTTGCGTTTGTTGAGTTTTCAGAGCATCAACATGCCCTTGTGGCTCTGAGAGTTCTAAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACACTGAAACTCCGGAAGACAAGGCTACAATTCCAAAAGCAAGCCTCTCGTGATGACATCGAAGCTAGTGAAAATGGTGTATCCAGCAAAAACGAAGTTGACACACATGTGAAGGACAGGAAACGGAAAACTCGGGAGAGTGGCAAACCAATGAATGATTTGGATAGAAATGGTGAATCAGGTGTTACAGTGGCAAATGGAAACACCCCAGAAGGACACAAATTCAAGAAACAGAAAGGCAAAAAAAGTAGAAAGGCTGAAGAATTACCAGAGAAAGAGAATTTGGATGCCTTGGCCATGAAACCAAAGAAAAACCAAGATGGCCGGAGCCGTGGTCGTGCACAACTTGAAGGTCAAAACCCTTCCATTGACACCAAGAAAGCAACATCAGGAAACAAGGTAGATGTTGGATCAAGAAAAAGGAAGATGCAAAACGAACAAGGAGACCAAAAGGTTTCTAAGAAACGTCCAAAAAAGAATAAACAATCAGTTGGAAAAGACGCGGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCGAAGTTCTCACACAAACGTTCCGAAGGGAATGACGGTGACAAAAAACCATCCAAACAGCTTAGAAAGTGGTTTGATGTATAA 2871 0.4124 MGKKSKLKEHSGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSTQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPPREERQSKPIQVGKTEDDPKSKNDDKDSKDSGEEKAVSISKAEEVQVSNKQRSSKRPMEMRKATLCSDIADDGGGSEKQRVARTVIFGSLINSDMAEDVHRQAKEIGTVCSIKYPLPRKDIELQGLLQDGCALDASAVLFTSVKSARAAVMALHKKEIKGGTVWARQLGGEGSKTQKWKLIIRNLPFKAGEKEIRDVFSSAGYVWDVFIPHKSDTGLSKGFGFVKFTCKQDAENAIQKFNGSKFAKRLIAVDWAVPKKIFSSDSNATEKEQETKDGDSSATDDDVEHIGDDNSSDDDDSDEENPSPMEKEGVPPEVDFDMEVDMTRKVLNNLIASSTKRASAQNDSMLPKENEEPESESDEDVDNKGNNESEKVSGVSNPEISNISNLSNPKQTEDVDLQRTVFINNLPFDCDNEEVKERFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANDAIKASNAASGILLKGRPLKVLKALDKKSAHSKELEKAKNEVNDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQQLEKKKKTKLQSPNFHVSRTRLIIYNVPKSMSEKELKKVCIDAVISRATKQKPVIRQIKFLKDAKKGGKVVHEHFSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKTRLQFQKQASRDDIEASENGVSSKNEVDTHVKDRKRKTRESGKPMNDLDRNGESGVTVANGNTPEGHKFKKQKGKKSRKAEELPEKENLDALAMKPKKNQDGRSRGRAQLEGQNPSIDTKKATSGNKVDVGSRKRKMQNEQGDQKVSKKRPKKNKQSVGKDAVDKLDMLIEQYRSKFSHKRSEGNDGDKKPSKQLRKWFDV 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03176 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 763 IPR000504 GO:0003723
Arst8g03176 956 MobiDBLite consensus disorder prediction 94 138 - -
Arst8g03176 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 580 IPR000504 GO:0003723
Arst8g03176 956 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 955 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 760 802 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 831 860 - -
Arst8g03176 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Arst8g03176 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Arst8g03176 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 561 IPR000504 GO:0003723
Arst8g03176 956 CDD RRM1_RBM28_like 19 97 - -
Arst8g03176 956 SMART rrm1_1 277 350 IPR000504 GO:0003723
Arst8g03176 956 SMART rrm1_1 19 92 IPR000504 GO:0003723
Arst8g03176 956 SMART rrm1_1 650 742 IPR000504 GO:0003723
Arst8g03176 956 SMART rrm1_1 500 576 IPR000504 GO:0003723
Arst8g03176 956 MobiDBLite consensus disorder prediction 361 414 - -
Arst8g03176 956 Gene3D - 648 744 IPR012677 -
Arst8g03176 956 MobiDBLite consensus disorder prediction 386 402 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 468 492 - -
Arst8g03176 956 Coils Coil 575 602 - -
Arst8g03176 956 Gene3D - 2 108 IPR012677 -
Arst8g03176 956 Gene3D - 432 594 IPR012677 -
Arst8g03176 956 Gene3D - 263 393 IPR012677 -
Arst8g03176 956 CDD RRM4_RBM28_like 649 747 - -
Arst8g03176 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Arst8g03176 956 CDD RRM3_RBM28_like 499 578 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 433 492 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 361 385 - -
Arst8g03176 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Arst8g03176 956 MobiDBLite consensus disorder prediction 882 902 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 911 956 - -
Arst8g03176 956 CDD RRM2_RBM28_like 277 353 - -
Arst8g03176 956 SUPERFAMILY RNA-binding domain, RBD 272 357 IPR035979 GO:0003676
Arst8g03176 956 FunFam RNA-binding motif protein 28 648 744 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 87 159 - -
Arst8g03176 956 FunFam - 2 130 - -
Arst8g03176 956 MobiDBLite consensus disorder prediction 861 881 - -
Arst8g03176 956 SUPERFAMILY RNA-binding domain, RBD 18 262 IPR035979 GO:0003676
Arst8g03176 956 MobiDBLite consensus disorder prediction 760 956 - -
Arst8g03176 956 SUPERFAMILY RNA-binding domain, RBD 499 728 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03176 Arst-Chr8 42877392 42885259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03176 20 352 Eukaryotic Initiation Factors Gene Family AT2G36660 23.894 9.77e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03176 K14573 - gmx:100794821 1326.61