Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03175 ATGGGTTCGACGGTGGATACACTCCCAGCTAAACGTCCGGCTCCAACTGAATATTCTTCTGAGGGACACAAAAGACTGAAATTGTCGTCTGATGGCTCCCCATACTCAAATGTTGTGGATTACAGTGACCCATTTGCAATATCTGCTGTTCTGAACCGGCTTGACAGTGGGGAATTTGGAAGTGTCACGAAGGACATAGAGGCCCTCAGAGTGCAGAAAATGCAAATGTTGGGACCATACTTTGCAAAATACCCTTCCCTGATCAATCAATTATTGAAAGTGGCAACTAACCATACTGAAGAAACTGTCAAATTGGAATTTGAACCAGTTACTAGTGCACATCAGGGTCTGATAAAGTTGGAGGGTGGGCAAATTAAGAAGAATGTTCCTGCAGCCCCAACATCTATCGTAATTATTGATTCAGATGATGAGGATGATAATGATAAAAATTCTGATCCTCGATTTCATCAAGTAGTGTTACCTGCACCAGTAAGACCATCTCCTGCGCTGCAGATGAATGGTCATGCTCCCATTGAATTCGATGAGAAAAGTAAAGTTCCAAAAATTGAGAAAAGTCTGGATGGTCAAGATACGAGTCCCAGAGACAAAGGTATCTATGTTGGTATACAAGAGGAAGAAGATGAGGTTGAAGAGAAAGATGATGGCTTAGGTGATATTTGGAGGGAAATGTCAATGGCTATAGAATGTTCGAAGGATGCTTCTATGAATGTGCTCGATGAAGAAGAGGAAAAGGAGGAAGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTATGTGGGGTTATCGAAAGAAGAATTGAGACCATATTTGAGTTTCAGTACAAGGTTAAAAGGAGTACAAGGACTTATGCATCTGATTCATGGAGTTCCAAAGAGAAAGCTGCGATGCTTGGGATCCACGTAGCTGAAGATGATCTTGTAGTGACTGATATTTCTGCACACCCGAGACATATGAAGCAAATGAAGCCACATCAAGTCGAGGGATTCAATTTTCTCGTGAGGAACCTCGCGGGTGATAATCCTGGGGGTTGCATCTTGGCTCATGCTCCTGGATCAGGGAAGACATTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAATATCCCAATGGTAGACCGCTAGTGGTGCTTCCCAAGGGAATACTATCAATTTGGAAAAAAGAATTCCAGAGATGGCAAGTTGAGGATATACCACTTCTGGATTTTTACAGTGTGAAGGCTGACAATAGATCTCAGCAACTGGAAGTTTTGAAAAAATGGAAGGACCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCACAGTTGTATGCGATGATTCCACCAGCAGAGCATCAGTAGACTGCCAGGAGATATTGCTTAAGGTTCCTTCTATTCTCATTTTAGATGAAGGGCACACTCCAAGGAATGAGAATACTGATATCATGCAGTCCCTTTCCAAAGTTCGAACACCTCGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTGCAGGAGGTGTTTAACATCTTAGATCTGGTGCGGCCGCCAAAATTTTTGAAGATGGAAACTTCTAAGCCTATTGTCAAGCGCATTTATAGCAGAGTGCATGTACCTGGTGTTCGAAACTTCTGTGATTTAGTCGAACATACTTTGCAGAAGGATACTGATTTCAGAAGAAAGGTGGCTGTCATTCAAGATTTACGTGAGATGACAAGCAAGGTGCTTCACTACTATAAAGGAGATTTTCTGGACGAGCTTCCTGGTATGGTTGATTTCACAGTGGTGCTCAACCTTACCTCTAGACAGAAGCATGAAGTTGAGAAATTGAAGAGGCTTTCCAGGAAGTTCAAAATATCTTCTGTTGGCAGTGCTACCTATCTTCATCCTAAGTTGAAACCTGTTGCTGAAAAATGTGGTGAGAACTCCATATCCGATAACATCATTGATGAGTTGATTGATAAACTAGATGTGAAAGATGGGGTGAAGTCAAAATTCTTTCGCAACATGCTCAACATGTGCGAGTCTGCTGGGGAGAAGCTTCTGGTTTTCAGTCAATATCTCCTACCTCTGAAATATTTGGAAAGGTTAGCAGTAAAATGGAATGGATGGAGCCTTGGCAAAGAAATTTTTGTCATCTCAGGAGAATCAAGCCCTGAACAACGGGAGTGGTCAATGGAAAAGTTCAACAGCTCGTCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGGGAGGGCATATCACTGGTTGGGGCATCCCGCGTAATCATTATGGATGTTCATCTCAATCCATCAGTTACTCGCCAAGCTATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGTATATCGGTTGTTGGCAGCAGATTCTCCAGAAGAGGAAGATCACGCTACTTGTTTCAAGAAGGAGTTGATTTCAAAGATGTGGTTTGAATGGAATGAGTATTGTGGTGATAGCGCTTTCGAAGTGGAGAGCGTCCCTGTGAAAGAATGTGGTGATTTCTTCCTCGAAAGTAATTCATTAGCTGAAGATGTTAAAGCTCTATATAGAAGGTAG 2601 0.4195 MGSTVDTLPAKRPAPTEYSSEGHKRLKLSSDGSPYSNVVDYSDPFAISAVLNRLDSGEFGSVTKDIEALRVQKMQMLGPYFAKYPSLINQLLKVATNHTEETVKLEFEPVTSAHQGLIKLEGGQIKKNVPAAPTSIVIIDSDDEDDNDKNSDPRFHQVVLPAPVRPSPALQMNGHAPIEFDEKSKVPKIEKSLDGQDTSPRDKGIYVGIQEEEDEVEEKDDGLGDIWREMSMAIECSKDASMNVLDEEEEKEEDCDHSFVLKDDLGYVCRVCGVIERRIETIFEFQYKVKRSTRTYASDSWSSKEKAAMLGIHVAEDDLVVTDISAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNGRPLVVLPKGILSIWKKEFQRWQVEDIPLLDFYSVKADNRSQQLEVLKKWKDQKSILFLGYKQFSTVVCDDSTSRASVDCQEILLKVPSILILDEGHTPRNENTDIMQSLSKVRTPRKVVLSGTLYQNHVQEVFNILDLVRPPKFLKMETSKPIVKRIYSRVHVPGVRNFCDLVEHTLQKDTDFRRKVAVIQDLREMTSKVLHYYKGDFLDELPGMVDFTVVLNLTSRQKHEVEKLKRLSRKFKISSVGSATYLHPKLKPVAEKCGENSISDNIIDELIDKLDVKDGVKSKFFRNMLNMCESAGEKLLVFSQYLLPLKYLERLAVKWNGWSLGKEIFVISGESSPEQREWSMEKFNSSSDAKVFFGSIKACGEGISLVGASRVIIMDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLLAADSPEEEDHATCFKKELISKMWFEWNEYCGDSAFEVESVPVKECGDFFLESNSLAEDVKALYRR 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03175 866 Pfam SNF2-related domain 354 618 IPR000330 GO:0005524|GO:0140658
Arst8g03175 866 CDD SF2_C_SNF 664 801 - -
Arst8g03175 866 Gene3D - 301 548 IPR038718 -
Arst8g03175 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 828 IPR027417 -
Arst8g03175 866 Gene3D - 598 855 IPR027417 -
Arst8g03175 866 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 200 865 IPR044567 GO:0080188
Arst8g03175 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 527 IPR014001 -
Arst8g03175 866 Pfam Helicase conserved C-terminal domain 680 789 IPR001650 -
Arst8g03175 866 SMART helicmild6 705 790 IPR001650 -
Arst8g03175 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 839 IPR001650 -
Arst8g03175 866 SMART ultradead3 330 541 IPR014001 -
Arst8g03175 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 547 IPR027417 -
Arst8g03175 866 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03175 Arst-Chr8 42853825 42861462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03175 687 808 RAD5 or RAD16-like Gene Family AT5G43530 36.885 6.01e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst8g03175 SNF2_N 6e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03175 K10875 - gmx:100780454 1292.33